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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Virtual Northern

Expression Pattern for cluster Hs.539684Text Legend

TissueEST DataSAGE DataEST DataSAGE Data
NormalCancerNormalCancerNormalCancerNormalCancer
ALL TISSUES 305 / 3316537 365 / 2498449 5417 / 114162531 8585 / 109592465 305 / 3316537 365 / 2498449 5417 / 114162531 8585 / 109592465
adrenal cortex --   -- -- -- 0 / 9928 -- --
adrenal medulla --   -- -- -- 0 / 247 -- --
bone 2 / 16077 10 / 57865 --   2 / 16077 10 / 57865 -- 0 / 83577
bone marrow   2 / 29891 73 / 5047110 57 / 4978364 0 / 14774 2 / 29891 73 / 5047110 57 / 4978364
brain 67 / 506301 15 / 200215 16 / 729526 265 / 4997811 67 / 506301 15 / 200215 16 / 729526 265 / 4997811
cartilage 3 / 15965 2 / 37226 -- 5 / 778035 3 / 15965 2 / 37226 -- 5 / 778035
cerebellum 12 / 90353   3 / 90885 76 / 1495938 12 / 90353 0 / 0 3 / 90885 76 / 1495938
cerebrum 18 / 198932   -- -- 18 / 198932 0 / 3422 -- --
cervix   31 / 44577 -- -- 0 / 3888 31 / 44577 -- --
colon 3 / 26551 21 / 151167   30 / 643586 3 / 26551 21 / 151167 0 / 98089 30 / 643586
ear   -- -- -- 0 / 16130 -- -- --
embryonic tissue 33 / 246043   -- -- 33 / 246043 0 / 38 -- --
endocrine     -- -- 0 / 19564 0 / 2857 -- --
esophagus   4 / 17290 -- -- 0 / 270 4 / 17290 -- --
eye 5 / 128826 8 / 46440 2 / 85898 528 / 12434232 5 / 128826 8 / 46440 2 / 85898 528 / 12434232
gastrointestinal tract 1 / 28803 1 / 12721 2 / 45908 -- 1 / 28803 1 / 12721 2 / 45908 --
heart 9 / 76442   1 / 83063 -- 9 / 76442 0 / 1 1 / 83063 --
kidney 11 / 106627 8 / 89898 6 / 155372 2 / 100281 11 / 106627 8 / 89898 6 / 155372 2 / 100281
limb -- -- -- -- -- -- -- --
liver 5 / 96846 15 / 107249 4 / 66308 16 / 214987 5 / 96846 15 / 107249 4 / 66308 16 / 214987
lung 7 / 128150 15 / 170663 5 / 159917 5 / 159059 7 / 128150 15 / 170663 5 / 159917 5 / 159059
lymph node 6 / 62650 8 / 27007 566 / 5278419 584 / 4863489 6 / 62650 8 / 27007 566 / 5278419 584 / 4863489
lymphoreticular   21 / 44303 -- -- 0 / 17836 21 / 44303 -- --
mammary gland 3 / 46553 15 / 104307 101 / 43166038 3629 / 30312656 3 / 46553 15 / 104307 101 / 43166038 3629 / 30312656
muscle 4 / 74039 1 / 27691   9 / 61270 4 / 74039 1 / 27691 0 / 107836 9 / 61270
nervous     -- -- 0 / 10333 0 / 8 -- --
ovary   12 / 89988 4 / 94887 4 / 179472 0 / 11462 12 / 89988 4 / 94887 4 / 179472
pancreas   4 / 74930 2 / 85728 9 / 189999 0 / 7237 4 / 74930 2 / 85728 9 / 189999
pancreatic islet     -- -- 0 / 96524 0 / 30072 -- --
parathyroid   2 / 20557 -- -- 0 / 24 2 / 20557 -- --
peripheral nervous system     -- -- 0 / 14891 0 / 645 -- --
pineal gland   -- -- -- 0 / 6170 -- -- --
pituitary gland     -- -- 0 / 13260 0 / 1358 -- --
placenta 18 / 241088 1 / 39531 7 / 207348 -- 18 / 241088 1 / 39531 7 / 207348 --
pooled tissue 21 / 276455   -- -- 21 / 276455 0 / 0 -- --
prostate 5 / 79993 17 / 107080 10 / 266949 29 / 491794 5 / 79993 17 / 107080 10 / 266949 29 / 491794
retina   -- 24 / 820326 22 / 88490 0 / 29438 -- 24 / 820326 22 / 88490
salivary gland 1 / 2490   -- -- 1 / 2490 0 / 10368 -- --
skin 18 / 73633 14 / 125377 1992 / 26905847 1533 / 34522313 18 / 73633 14 / 125377 1992 / 26905847 1533 / 34522313
soft tissue --   -- -- -- 0 / 3 -- --
spleen 4 / 52939   -- -- 4 / 52939 0 / 5 -- --
stem cell -- -- 352 / 6230144 -- -- -- 352 / 6230144 --
stomach 5 / 26641 7 / 65644 19 / 124767 42 / 448716 5 / 26641 7 / 65644 19 / 124767 42 / 448716
synovium     -- -- 0 / 249 0 / 1650 -- --
testis 1 / 143630 44 / 100058 -- 1719 / 12372003 1 / 143630 44 / 100058 -- 1719 / 12372003
thymus     -- -- 0 / 4478 0 / 165 -- --
thyroid   2 / 32606 7 / 115938 15 / 124664 0 / 11737 2 / 32606 7 / 115938 15 / 124664
uncharacterized tissue 31 / 207932 65 / 479819 1 / 21833 6 / 51729 31 / 207932 65 / 479819 1 / 21833 6 / 51729
uterus 3 / 38063 20 / 133582 1160 / 10193077 -- 3 / 38063 20 / 133582 1160 / 10193077 --
vascular 9 / 46250 -- 1028 / 13135050 -- 9 / 46250 -- 1028 / 13135050 --
white blood cells -- -- 32 / 846268 -- -- -- 32 / 846268 --
whole body -- -- -- -- -- -- -- --