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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Library Info Page


Library ID

Library Name:NIH_BMAP_HN0
Organism:Mus musculus
Strain:C57BL/6
UniGene Library ID:15320
Tissue Description:Head, upper
Library Keywords:normal, non-normalized, BMAP, bulk, EST, MGC, plasmid vector, directionally cloned, oligo-dT primed, C57BL/6, organogenesis, embryonic head

Clones and Sequences

#Clones Generated to Date:11520
#Sequences Generated to Date:9230

Library Preparation Details

Description:The library was constructed according Bonaldo, Lennon and Soares, Genome Research, 6:791-806, 1996. Denatured RNA was size fractionated on a 1% agarose gel.First strand cDNA synthesis was primed with oligo-dT primer containing a Not I site. Double strand cDNA was size selected according to mRNA size fraction, ligated with EcoR I adaptor, digested with NotI and then cloned directionally into pYX-Asc vector. The library tag sequence located between the Not I site and the polyA tail is CGAACTGAAT. This library was created for the University Iowa Brain Anatomy Project (BMAP): 'Gene Discovery in the Developing Mouse Nervous System', supported by National Institute of Mental Health (NIMH).
R. Site1:EcoR I
R. Site2:Not I
Lab Host:DH10B (T1 phage resistant)
Vector:pYX-Asc
Vector Type:Plasmid
Tissue Supplier:Dr. James Lin, University of Iowa
Library Producer:Soares Laboratory