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SAGE Genie
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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

SAGE Library Info

Library ID

New SAGE Library Name:SAGE_Breast_carcinoma_B_95-259
Old SAGE Library Name:
Organism:Homo sapiens
Library Keywords:mammary gland, ductal, carcinoma, non-normalized, short SAGE, bulk

Tag Info

#Total tags:39,412
#Tags excluding linkers:39,364
#Unique tags:14,924

Tissue Info

Cell/Histology type:carcinoma
Tissue preparation:bulk
Mutations:ER-, PR-
Patient age:56.5
Other info:Invasive ductal carcinoma - primary tumor. Age at discovery 56.5 years, 10 postive lymph nodes, 3 cm primary tumor, histo grade = 3, nuclear grade = 3, ER-, PR-.

Library Preparation Info

Tagging enzyme:BsmFI
Anchoring enzyme:NlaIII
Tissue or cell line supplier:Jeffrey Marks, Duke University Medical Center
Library preparer:Kornelia Polyak
Prepared in lab of:Kornelia Polyak, Dana-Farber Cancer Institute
References:D. A. Porter et al., Cancer Res 61, 5697-702 (2001)