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SAGE Genie
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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


SAGE Library Info

Library ID

New SAGE Library Name:SAGE_Retina_Peripheral_normal_B_4Peri
Old SAGE Library Name:
Organism:Homo sapiens
Library Keywords:retina, normal peripheral retina, normal, bulk, human, female, adult, short sage

Tag Info

#Total tags:126,738
#Tags excluding linkers:126,691
#Unique tags:47,840

Tissue Info

Tissue:retina
Cell/Histology type:normal peripheral retina
Tissue preparation:bulk
Mutations:null
Patient age:28-66 year old pool of 5 donors
Sex:female
Other info:Libraries were constructed using RNA isolated from pooled 4 mm diameter punches of the macula (encompassing the fovea) and matched 4 mm diameter punches of pooled mid-peripheral retina from the same five donors designated, "4Mac" and "4Peri", respectively.

Library Preparation Info

Tagging enzyme:BsmFI
Anchoring enzyme:NlaIII
Tissue or cell line supplier:null
Library preparer:Jessica Ebright
Prepared in lab of:Catherine Bowes Rickman, Duke University Eye Center
References:Bowes Rickman C and Ebright JN, et al. Defining the Human Macula Transcriptome and Candidate Retinal Disease Genes Using EyeSAGE. Invest Ophthalmol Vis Sci. 2006 Jun;47(6):2305-16.