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SAGE Genie
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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

SAGE Library Info

Library ID

New SAGE Library Name:SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC9
Old SAGE Library Name:
Organism:Homo sapiens
Library Keywords:breast, carcinoma, antibody purified, epithelium, extracted short sage, female, adult

Tag Info

#Total tags:65,953
#Tags excluding linkers:65,935
#Unique tags:25,520

Tissue Info

Cell/Histology type:Grade I, ER+, PR+, Her2- invasive ductal carcinoma
Tissue preparation:antibody purified
Patient age:null
Other info:BerEP4 purified epithelial cells from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-EPI-9 epithelial cells"

Library Preparation Info

Tagging enzyme:MmeI
Anchoring enzyme:NlaIII
Tissue or cell line supplier:Andrea Richardson, MD, PhD
Library preparer:Kornelia Polyak, MD,PhD
Prepared in lab of:Polyak laboratory Dana-Farber Cancer Institute
References:Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32.