Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: TTAAATAAAA

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Foreskin_normal_B_hs030539403502563130   
SAGE_Lymph_node_Lymphoma_B_hs019647914812513104   
SAGE_Skin_Cancer_B_hs02833692239151181   
SAGE_Skin_Normal_B_hs02783042221123280   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161239275   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC28579562172   
SAGE_Brain_medulloblastoma_B_97-05-P015699712468   
SAGE_Bladder_Cancer_B_hs02645833968189664   
SAGE_Lymph_node_Lymphoma_B_hs02045178993166564   
SAGE_Skin_Normal_B_hs02724397550142664   
SAGE_Peripheral_Blood_Cancer_B_hs04306399705200562   
SAGE_Vein_normal_B_hs02376135688192462   
SAGE_Skin_Normal_B_hs02715807686178061   
SAGE_Skin_Melanoma_B_hs02733881770113258   
SAGE_Skin_Cancer_B_hs02803618498104657   
SAGE_Bladder_Cancer_B_hs02654640198124753   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848151852   
SAGE_Urothelium_normal_B_hs0239311430781552   
SAGE_Brain_Medulloblastoma_CL_425C2626421651   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb669881750   
SAGE_Skin_Cancer_B_hs0284389250798950   
SAGE_Breast_normal_epithelium_CD24+_AP_N2415511048   
SAGE_Bladder_Cancer_B_hs0266424461297345   
SAGE_Skin_Normal_B_hs02775269789118645   
SAGE_Breast_carcinoma_B_95-347670701544   
SAGE_GallBladder_Adenocarcinoma_B_NAM01785481743   
SAGE_Skin_Melanoma_B_hs0274389521185643   
SAGE_Skin_Melanoma_B_hs0275412822190643   
SAGE_Brain_medulloblastoma_CL_4-HCR665991442   
SAGE_Breast_carcinoma_CL_MDA435C472701042   
SAGE_Retina_Retinoblastoma_B_1884901840   
SAGE_Prostate_normal_epithelium_CS_senescent717171439   
SAGE_Brain_glioblastoma_B_H13531248052438   
SAGE_Breast_Carcinoma_CD24+_C4_IDC40357091069438   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517352938   
SAGE_Lymph_Node_Lymphoma_B_1720081438   
SAGE_Ovary_adenocarcinoma_B_OVT-641443838   
SAGE_Retina_Peripheral_normal_B_21053122037   
SAGE_Breast_normal_myoepithelium_CL_HME50555161036   
SAGE_Breast_carcinoma_MD_LCIS678341235   
SAGE_Breast_carcinoma_associated_stroma_B_IDC7680241235   
SAGE_Breast_fibroadenoma_MD556881035   
SAGE_Embryonic_stem_cell_normal_CL_hs0238363608364035   
SAGE_Skin_Normal_B_hs02816517089116035   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02135935490106635   
SAGE_Vein_normal_B_hs02306755622121535   
SAGE_Brain_normal_cerebellum_B_BB54240500734   
SAGE_Kidney_embryonic_CL_293+beta-catenin23519434   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE172762034633   
SAGE_Placenta_hydatidiform_mole_B_11016771733   
SAGE_Prostate_normal_epithelium_CS_confluent718971233   
SAGE_GallBladder_Normal_B_HN857061432   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE142121703331   
SAGE_Brain_ependymoma_B_R510840731330   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC2639361630   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_07020259575930   
SAGE_Brain_astrocytoma_grade_II_B_H5301024391529   
SAGE_Brain_medulloblastoma_B_98-05-P040892581329   
SAGE_Brain_medulloblastoma_B_C609746121129   
SAGE_Breast_carcinoma_CL_MDA435H4840323629   
SAGE_Breast_metastatic_carcinoma_B_LN260343929   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC734399529   
SAGE_Bladder_Cancer_B_hs0241333580147828   
SAGE_Brain_normal_substantia_nigra_B_141773628   
SAGE_Bone_marrow_normal_B_D0136577527   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC31420875557527   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE192016682827   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE102053532827   
SAGE_Retina_macula_normal_B_HMAC21024171427   
SAGE_Brain_medulloblastoma_B_H87667404926   
SAGE_Breast_metastatic_carcinoma_B_LN145087626   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC769006926   
SAGE_Retina_Peripheral_normal_B_159661826   
SAGE_Brain_astrocytoma_grade_III_B_3431001581325   
SAGE_Brain_glioblastoma_CL_28d1106241425   
SAGE_Brain_medulloblastoma_B_98-09-P558859841125   
SAGE_Brain_medulloblastoma_B_H972853761125   
SAGE_Breast_carcinoma_CL_MDA435H2446631625   
SAGE_Retina_normal_B_4cRet1037011325   
SAGE_Brain_astrocytoma_grade_II_B_H5181160221424   
SAGE_Brain_medulloblastoma_B_98-04-P11732570424   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS657049724   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N148729624   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N157222724   
SAGE_Eye_Retinoblastoma_B_hs038912434232153424   
SAGE_GallBladder_Adenocarcinoma_B_C01813801024   
SAGE_Thyroid_normal_B_0011159381424   
SAGE_Bladder_Cancer_B_hs0240621642672123   
SAGE_Brain_ependymoblastoma_B_81933975423   
SAGE_Brain_glioblastoma_B_H111068986823   
SAGE_Breast_carcinoma_B_DCIS-460605723   
SAGE_Breast_carcinoma_B_DCIS-543098523   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N250512623   
SAGE_Colon_adenocarcinoma_CL_Caco260682723   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P151634623   
SAGE_Brain_astrocytoma_grade_III_B_R9271073441222   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC2954080622   
SAGE_Uterus_Normal_B_hs0194645262372722   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A153795622   
SAGE_Brain_Medulloblastoma_CL_UW228-N949371021   
SAGE_Brain_astrocytoma_grade_III_B_H10551098861221   
SAGE_Brain_ependymoma_B_23946653521   
SAGE_Brain_glioblastoma_B_R3361023221121   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII56982621   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC873967821   
SAGE_Stomach_normal_MD_14S73353821   
SAGE_White_Blood_Cells_monocytes_normal_AP_C11016561121   
SAGE_Brain_astrocytoma_grade_III_B_4071083121120   
SAGE_Brain_astrocytoma_grade_II_B_H1271144891220   
SAGE_Brain_medulloblastoma_B_98-05-P60848451520   
SAGE_Breast_Carcinoma_CD24+_C1_IDC31428660444620   
SAGE_Breast_carcinoma_CL_ZR75_1_estrogen38797420   
SAGE_Breast_carcinoma_metastasis_B_249794520   
SAGE_Lung_normal_B_188708920   
SAGE_Uterus_normal_B_hs0195371846337220   
SAGE_Brain_Medulloblastoma_CL_UW228-V280827819   
SAGE_Brain_glioblastoma_CL_4d1152121119   
SAGE_Breast_normal_B_gestational hyperplasia161704619   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES24014324019   
SAGE_Muscle_Rhabdomyosarcoma_B_161270619   
SAGE_Ovary_carcinoma_CL_ES2-131159319   
SAGE_Stomach_carcinoma_B_G18963075619   
SAGE_Brain_glioblastoma_CL_stem_cells1084141018   
SAGE_Brain_medulloblastoma_B_96-04-P01952645518   
SAGE_Brain_normal_peds_cortex_B_H157177554718   
SAGE_Breast_carcinoma_B_CT15_IDC21840218   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC963539618   
SAGE_Liver_normal_B_166308618   
SAGE_Ovary_carcinoma_CL_A278021369218   
SAGE_Prostate_adenocarcinoma_MD_PR31764951618   
SAGE_Uterus_endometrium_normal_CS_DI121991218   
SAGE_White_Blood_Cells_monocyte_normal_AP_A199913918   
SAGE_White_Blood_Cells_monocytes_normal_AP_A298786918   
SAGE_White_Blood_Cells_normal_breast_associated_CD45+_AP31985318   
SAGE_Brain_astrocytoma_grade_II_B_H359105764917   
SAGE_Brain_glioblastoma_B_H1425C88990817   
SAGE_Brain_medulloblastoma_B_98-13-P30145342417   
SAGE_Brain_medulloblastoma_B_H48457469517   
SAGE_Breast_Carcinoma_CD24+_C2_IDC34472096041317   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC40338124028817   
SAGE_Esophagus_Dysplasia_B_HGD0278611717   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P1102873917   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+61519516   
SAGE_Brain_astrocytoma_grade_III_B_R1401187331016   
SAGE_Brain_ependymoma_B_R35373822616   
SAGE_Brain_glioblastoma_B_R7099099816   
SAGE_Brain_medulloblastoma_B_H27572318616   
SAGE_Brain_normal_thalamus_B_124015216   
SAGE_Breast_carcinoma_B_IDC-560451516   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC773410616   
SAGE_Lung_adenocarcinoma_B_136256316   
SAGE_Placenta_normal_B_11180831016   
SAGE_Prostate_normal_MD_PR31759277516   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-266168515   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC965935515   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE250132415   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE252342415   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N1563994515   
SAGE_Liver_cholangiocarcinoma_CL_K452973415   
SAGE_Prostate_carcinoma_B_pool266034515   
SAGE_Retina_Macula_normal_B_4Mac101417815   
SAGE_Stomach_normal_B_antrum26653215   
SAGE_Universal_reference_human_RNA_CL51729415   
SAGE_White_Blood_Cells_lung_macrophage_normal_AP_L151872415   
SAGE_Brain_astrocytoma_grade_III_B_H27296059714   
SAGE_Brain_glioblastoma_B_pooled56428414   
SAGE_Brain_medulloblastoma_B_DL583671614   
SAGE_Breast_carcinoma_CL_ZR75_1_tamoxifen40052314   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE152211011614   
SAGE_Lymph_Node_normal_B_199426714   
SAGE_Prostate_carcinoma_CL_LNCaP-C40029314   
SAGE_Rheumatoid_arthritis_synovial_fibroblast_CS42472314   
SAGE_Skin_Normal_B_hs0282441163632814   
SAGE_Thyroid_follicular_carcinoma_B_TT004124664914   
SAGE_Brain_astrocytoma_grade_II_B_H388106285713   
SAGE_Brain_ependymoma_B_R51275379513   
SAGE_Brain_glioblastoma_B_GBM106259762413   
SAGE_Brain_glioblastoma_B_R20101053713   
SAGE_Breast_carcinoma_CL_MCF7control_0h59877413   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h60162413   
SAGE_Prostate_carcinoma_CL_LNCaP-T43542313   
SAGE_Brain_astrocytoma_grade_II_B_H501128309812   
SAGE_Brain_fetal_normal_B_S13055461912   
SAGE_Brain_glioblastoma_CS_TA246678312   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC27379656822912   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC866520412   
SAGE_Breast_normal_epithelium_CD44+_AP_N580464512   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen79284512   
SAGE_Embryo_Pre-Cancer_B_hs0324689301643112   
SAGE_Ovary_adenocarcinoma_B_OVT-831987212   
SAGE_Peritoneum_mesothelioma_B_1232529212   
SAGE_Brain_astrocyte_normal_CL_NHA551481311   
SAGE_Brain_astrocytoma_grade_III_B_584103008611   
SAGE_Brain_astrocytoma_grade_II_B_H56388568511   
SAGE_Brain_medulloblastoma_B_DL768392411   
SAGE_Brain_normal_cerebellum_B_150385311   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC2852781311   
SAGE_Breast_normal_FS_NER34565211   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES92244881311   
SAGE_Lung_adenocarcinoma_MD_L935916211   
SAGE_Retina_Peripheral_normal_B_4Peri126691711   
SAGE_Brain_normal_cortex_B_BB54294233510   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741022210   
SAGE_Breast_carcinoma_B_95-25939364210   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP78785410   
SAGE_Breast_normal_epithelium_MUC1+_AP_N576227410   
SAGE_Breast_normal_organoid_B58181310   
SAGE_Colon_adenocarcinoma_CL_HCT11655641310   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia79053410   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia79015410   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE112092321110   
SAGE_Ovary_cystadenoma_CL_ML10-1055144310   
SAGE_Pancreas_adenocarcinoma_CL_CAPAN137674210   
SAGE_Stomach_adenocarcinoma_MD_HS2958831310   
SAGE_Brain_astrocytoma_grade_III_B_H97010698259   
SAGE_Brain_ependymoma_B_R102312269069   
SAGE_Brain_medulloblastoma_B_98-04-P4944306829   
SAGE_Breast_carcinoma_B_IDC-46409539   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H6072539   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509139   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986259   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Normal_Oxygen8039849   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE16218214109   
SAGE_Fibroblasts_CL_postcrisis2183319   
SAGE_Kidney_embryonic_CL_293-control4195529   
SAGE_Lung_normal_CL_L154222629   
SAGE_Pancreas_normal_B_12152019   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_DCIS66617639   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115859   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729148   
SAGE_Brain_ependymoma_B_H5806861438   
SAGE_Brain_medulloblastoma_CL_mhh-14785828   
SAGE_Brain_meningioma_grade_II_B_SF21764871128   
SAGE_Breast_carcinoma_B_IDC-36889138   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918448   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE13272465128   
SAGE_Esophagus_Adenocarcinoma_B_CA1D7379338   
SAGE_Leukocytes_normal_B_14787328   
SAGE_Liver_cholangiocarcinoma_B_K2D4685328   
SAGE_Pancreas_adenocarcinoma_CL_Panc12474918   
SAGE_Prostate_carcinoma_B_LN-12259918   
SAGE_Stomach_adenocarcinoma_MD_G3294680228   
SAGE_Stomach_normal_epithelium_B_body12476118   
SAGE_Brain_astrocytoma_grade_II_B_H51610811647   
SAGE_Brain_ependymoma_B_13945631427   
SAGE_Brain_ependymoma_B_R4555182527   
SAGE_Brain_ependymoma_B_R5825218927   
SAGE_Brain_glioblastoma_B_H83310060047   
SAGE_Brain_meningioma_grade_I_B_SF44655464727   
SAGE_Breast_carcinoma_B_BWHT18_DCIS5070127   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP7514737   
SAGE_Breast_normal_epithelium_CD24+_AP_N57646937   
SAGE_Kidney_carcinoma_B_D210028147   
SAGE_Liver_cholangiocarcinoma_CL_K35484227   
SAGE_Muscle_normal_B_young5394727   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726237   
SAGE_Skin_Cancer_B_hs027957032982027   
SAGE_Spinal_cord_normal_B_15478527   
SAGE_Vascular_endothelium_hemangioma_B_1467568037   
SAGE_White_Blood_Cells_monocytes_normal_AP_P25442627   
SAGE_Brain_astrocytoma_grade_III_B_8289993936   
SAGE_Brain_ependymoma_B_11506237326   
SAGE_Brain_glioblastoma_control_CL_H2476042826   
SAGE_Brain_medulloblastoma_B_H14136185326   
SAGE_Brain_normal_cortex_B_pool66245126   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-35740226   
SAGE_Pancreas_carcinoma_CL_ASPC3122416   
SAGE_Prostate_normal_B_26405826   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019936   
SAGE_Skin_Melanoma_B_hs027656318001886   
SAGE_Testis_Embyronal_Carcinoma_B_16635226   
SAGE_Vascular_normal_CS_VEGF+5731626   
SAGE_Bone_Marrow_Normal_FS_hs040448425471305   
SAGE_Brain_astrocytoma_grade_III_B_43910782435   
SAGE_Brain_medulloblastoma_B_12733861415   
SAGE_Brain_medulloblastoma_B_97-05-P3127429525   
SAGE_Brain_normal_leptomeninges_B_AL27247325   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285725   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N57617325   
SAGE_Pancreas_adenocarcinoma_B_91-161133358215   
SAGE_Prostate_carcinoma_CL_PC3_Mock3881915   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC17775925   
SAGE_Brain_medulloblastoma_CL_H3414392014   
SAGE_Brain_meningioma_grade_II_B_SF36224485714   
SAGE_Colon_adenocarcinoma_B_Tu984137114   
SAGE_Ovary_normal_CL_IOSE29EC-114715914   
SAGE_Prostate_carcinoma_CL_PC3_AS24076814   
SAGE_Stomach_adenocarcinoma_MD_HG79371424   
SAGE_Stomach_normal_MD_13S4590814   
SAGE_Brain_astrocytoma_grade_III_B_H10205157313   
SAGE_Brain_ependymoma_B_R62812043123   
SAGE_Brain_medulloblastoma_B_H3066045413   
SAGE_Brain_medulloblastoma_CL_D2836631613   
SAGE_Brain_meningioma_grade_III_B_SF23665978613   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC35247813   
SAGE_Breast_normal_stroma_B_IDC85048513   
SAGE_Colon_adenocarcinoma_CL_SW8376114813   
SAGE_Liver_cholangiocarcinoma_B_K16031913   
SAGE_Ovary_adenocarcinoma_B_OVT-75351413   
SAGE_Peritoneum_normal_B_135352713   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT6216013   
SAGE_Retina_Pigment_epithelium_normal_B_15366613   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531413   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037732   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-8639112   
SAGE_Brain_astrocytoma_grade_I_B_H10437592212   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176512   
SAGE_Brain_meningioma_grade_I_B_SF42716925312   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS68145212   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU07501912   
SAGE_Esophagus_Normal_B_CN017563412   
SAGE_Eye_lens_B_UIHI08589812   
SAGE_Placenta_first_trimester_normal_B_18926512   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP010831911   
SAGE_Thyroid_follicular_adenoma_B_TT00510157811   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N33964688040   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N351358422380   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N47303600210   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227410   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N5811007864320