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Cancer Genome Characterization Initiative

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SAGE_Breast_carcinoma_CL_MCF7control_0h5987730100   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H607252582   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h601622273   
SAGE_Brain_medulloblastoma_B_H1322594981343   
SAGE_Brain_astrocytoma_grade_III_B_H9701069821324   
SAGE_Brain_normal_thalamus_B_124015324   
SAGE_Pancreas_adenocarcinoma_CL_Panc124749324   
SAGE_Brain_fetal_normal_B_S13055463623   
SAGE_Brain_medulloblastoma_B_98-13-P30145342522   
SAGE_Brain_ependymoma_B_23946653521   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC177759820   
SAGE_Brain_normal_substantia_nigra_B_141773419   
SAGE_Brain_normal_peds_cortex_B_H157177554718   
SAGE_Ovary_carcinoma_CL_A278021369218   
SAGE_Retina_Retinoblastoma_B_188490818   
SAGE_Brain_glioblastoma_B_pooled56428517   
SAGE_Brain_meningioma_grade_II_B_SF362244857417   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-357402517   
SAGE_Breast_metastatic_carcinoma_B_LN145087417   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517351317   
SAGE_GallBladder_Adenocarcinoma_B_C0181380717   
SAGE_Brain_ependymoma_B_R10231226901016   
SAGE_Brain_medulloblastoma_B_98-05-P60848451416   
SAGE_Brain_medulloblastoma_B_98-09-P55885984716   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES24014323115   
SAGE_Brain_normal_cerebellum_B_BB54240500314   
SAGE_Brain_astrocytoma_grade_III_B_343100158713   
SAGE_Brain_astrocytoma_grade_II_B_H518116022813   
SAGE_Brain_ependymoma_B_R628120431813   
SAGE_Brain_medulloblastoma_B_98-05-P04089258613   
SAGE_Brain_medulloblastoma_B_C60974612513   
SAGE_Brain_medulloblastoma_B_H48457469413   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE132724651913   
SAGE_Prostate_carcinoma_CL_LNCaP-T43542313   
SAGE_Retina_normal_B_4cRet103701713   
SAGE_Brain_astrocytoma_grade_III_B_H27296059612   
SAGE_Brain_ependymoma_B_115062373412   
SAGE_Brain_oligodendroglioma_B_100132442212   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE192016681312   
SAGE_Lymph_Node_normal_B_199426612   
SAGE_Retina_Peripheral_normal_B_4Peri126691812   
SAGE_Brain_astrocytoma_grade_III_B_R140118733711   
SAGE_Brain_ependymoblastoma_B_81933975211   
SAGE_Retina_Macula_normal_B_4Mac101417611   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE90199511   
SAGE_Universal_reference_human_RNA_CL51729311   
SAGE_Brain_glioblastoma_CL_4d115212610   
SAGE_Breast_carcinoma_B_95-25939364210   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC2639361210   
SAGE_Brain_astrocytoma_grade_III_B_R92710734459   
SAGE_Brain_astrocytoma_grade_II_B_H35910576459   
SAGE_Brain_ependymoma_B_R5108407349   
SAGE_Brain_medulloblastoma_B_H3066045439   
SAGE_Brain_medulloblastoma_B_H9728537649   
SAGE_Brain_normal_cortex_B_pool66245139   
SAGE_Breast_metastatic_carcinoma_B_LN26034339   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE15221101109   
SAGE_Eye_Retinoblastoma_B_hs0389124342325689   
SAGE_Retina_Peripheral_normal_B_210531259   
SAGE_Retina_macula_normal_B_HMAC210241759   
SAGE_Brain_astrocytoma_grade_II_B_H12711448958   
SAGE_Brain_glioblastoma_B_H135312480558   
SAGE_Brain_glioblastoma_B_H1425C8899048   
SAGE_Brain_glioblastoma_CS_TA24667828   
SAGE_Colon_normal_B_NC24847928   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE1120923298   
SAGE_Stomach_normal_MD_14S7335338   
SAGE_Stomach_normal_epithelium_B_body12476118   
SAGE_Brain_astrocyte_normal_CL_NHA55148127   
SAGE_Brain_astrocytoma_grade_III_B_40710831247   
SAGE_Brain_astrocytoma_grade_III_B_43910782447   
SAGE_Brain_astrocytoma_grade_III_B_H10205157327   
SAGE_Brain_astrocytoma_grade_III_B_H105510988647   
SAGE_Brain_astrocytoma_grade_II_B_H50112830957   
SAGE_Brain_astrocytoma_grade_II_B_H51610811647   
SAGE_Brain_ependymoma_B_13945631427   
SAGE_Brain_glioblastoma_CL_28d11062447   
SAGE_Brain_medulloblastoma_B_DL58367137   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE25013227   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES922448887   
SAGE_Spinal_cord_normal_B_15478527   
SAGE_Stomach_normal_B_antrum2665317   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021359354902137   
SAGE_Vascular_normal_CS_control5164227   
SAGE_Bladder_Cancer_B_hs026458339681976   
SAGE_Brain_medulloblastoma_CL_D2836631626   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC96593526   
SAGE_Colon_adenocarcinoma_CL_SW8376114826   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217076   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE1727620396   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE1621821476   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535376   
SAGE_Pancreas_carcinoma_CL_PL452955716   
SAGE_Pancreas_normal_CS_HX3198516   
SAGE_Prostate_adenocarcinoma_MD_PR3176495126   
SAGE_Vascular_normal_CS_VEGF+5731626   
SAGE_Brain_astrocytoma_grade_I_B_H10437592225   
SAGE_Brain_ependymoma_B_H5806861425   
SAGE_Brain_glioblastoma_B_H83310060035   
SAGE_Brain_glioblastoma_B_R33610232235   
SAGE_Brain_medulloblastoma_B_97-05-P0156997125   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC3142087551105   
SAGE_Breast_carcinoma_associated_stroma_B_IDC76802425   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP7514725   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP7878525   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905325   
SAGE_Lung_adenocarcinoma_MD_L93591615   
SAGE_Pancreas_adenocarcinoma_B_91-161133358215   
SAGE_Prostate_carcinoma_CL_PC3_Mock3881915   
SAGE_Vein_normal_B_hs023761356881785   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC73439915   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159524   
SAGE_Brain_Medulloblastoma_CL_UW228-N9493724   
SAGE_Brain_glioblastoma_B_R709909924   
SAGE_Brain_medulloblastoma_CL_mhh-14785814   
SAGE_Brain_meningioma_grade_II_B_SF21764871114   
SAGE_Breast_Carcinoma_CD24+_C1_IDC314286604874   
SAGE_Breast_carcinoma_B_DCIS-54309814   
SAGE_Breast_carcinoma_CL_MDA435C4727014   
SAGE_Breast_carcinoma_CL_MDA435H484032314   
SAGE_Breast_carcinoma_MD_DCIS4078314   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N14872914   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Ovary_normal_CL_IOSE29EC-114715914   
SAGE_Prostate_carcinoma_CL_PC3_AS24076814   
SAGE_Rheumatoid_arthritis_synovial_fibroblast_CS4247214   
SAGE_Stomach_adenocarcinoma_MD_G3294680214   
SAGE_Vein_normal_B_hs023067556221404   
SAGE_Bladder_Cancer_B_hs02413335801583   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+6151913   
SAGE_Brain_astrocytoma_grade_III_B_58410300823   
SAGE_Brain_ependymoma_B_R5825218913   
SAGE_Brain_glioblastoma_B_GBM10625976213   
SAGE_Brain_medulloblastoma_B_H14136185313   
SAGE_Brain_medulloblastoma_CL_4-HCR6659913   
SAGE_Brain_normal_cerebellum_B_15038513   
SAGE_Breast_Carcinoma_CD24+_C2_IDC344720960803   
SAGE_Breast_carcinoma_B_IDC-46409513   
SAGE_Breast_carcinoma_B_IDC-56045113   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC285795613   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC295408013   
SAGE_Breast_fibroadenoma_MD5568813   
SAGE_Breast_normal_epithelium_CD44+_AP_N25600813   
SAGE_Breast_normal_myoepithelium_CL_HME505551613   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986223   
SAGE_Liver_normal_B_16630813   
SAGE_Lymph_node_Lymphoma_B_hs020451789931013   
SAGE_Muscle_Rhabdomyosarcoma_B_16127013   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Placenta_normal_B_111808323   
SAGE_Prostate_carcinoma_CL_LNCaP6025013   
SAGE_Retina_Peripheral_normal_B_15966113   
SAGE_Skin_Cancer_B_hs027957032981113   
SAGE_Stomach_adenocarcinoma_B_G2346492513   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021263701611273   
SAGE_Thyroid_follicular_adenoma_B_TT00510157823   
SAGE_Thyroid_follicular_carcinoma_B_TT00412466423   
SAGE_Uterus_normal_B_hs01953718463573   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_15702313   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A15379513   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P15163413   
SAGE_Bladder_Cancer_B_hs02654640198542   
SAGE_Bladder_Cancer_B_hs02664244612572   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729112   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082712   
SAGE_Brain_ependymoma_B_R3537382212   
SAGE_Brain_ependymoma_B_R5127537912   
SAGE_Brain_glioblastoma_B_H11106898612   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176512   
SAGE_Brain_medulloblastoma_B_97-05-P3127429512   
SAGE_Brain_medulloblastoma_B_DL76839212   
SAGE_Brain_medulloblastoma_B_H2757231812   
SAGE_Brain_medulloblastoma_B_H8766740412   
SAGE_Brain_meningioma_grade_I_B_SF42716925312   
SAGE_Brain_normal_cortex_B_BB5429423312   
SAGE_Breast_Carcinoma_CD24+_C4_IDC403570910472   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568402   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240372   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N481802274192   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N471890938242   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N481048765152   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N58110078641632   
SAGE_Breast_carcinoma_B_95-3476707012   
SAGE_Breast_normal_epithelium_CD44+_AP_N58046412   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC76900612   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA09384612   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU07501912   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX08843912   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen7928412   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Normal_Oxygen8039812   
SAGE_Esophagus_Dysplasia_B_HGD027861112   
SAGE_Esophagus_Dysplasia_B_LGD017490412   
SAGE_Esophagus_Normal_B_CN017563412   
SAGE_Eye_lens_B_UIHI08589812   
SAGE_GallBladder_Adenocarcinoma_B_NAM017854812   
SAGE_Heart_normal_B_18306312   
SAGE_Lung_normal_B_18870812   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896212   
SAGE_Lymph_Node_Lymphoma_B_17200812   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848672   
SAGE_Peripheral_Blood_Cancer_B_hs04306399705702   
SAGE_Placenta_first_trimester_normal_B_18926512   
SAGE_Prostate_normal_epithelium_CS_confluent7189712   
SAGE_Prostate_normal_epithelium_CS_senescent7171712   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726212   
SAGE_Skin_Cancer_B_hs02843892507482   
SAGE_Skin_Melanoma_B_hs02743895211572   
SAGE_Skin_Melanoma_B_hs02765631800612   
SAGE_Uterus_Normal_B_hs01946452623742   
SAGE_Bladder_Cancer_B_hs02406216426451   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037261   
SAGE_Brain_astrocytoma_grade_II_B_H38810628511   
SAGE_Brain_glioblastoma_CL_stem_cells10841411   
SAGE_Breast_Carcinoma_CD24+_C3_IDC384117410371   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N3513584223891   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N473036002241   
SAGE_Embryo_Pre-Cancer_B_hs03246893016541   
SAGE_Embryonic_stem_cell_normal_CL_hs02383636083341   
SAGE_Foreskin_normal_B_hs03053940350321   
SAGE_Skin_Melanoma_B_hs02733881770231   
SAGE_Skin_Normal_B_hs02715807686341   
SAGE_Skin_Normal_B_hs02724397550421   
SAGE_Skin_Normal_B_hs02783042221171   
SAGE_Skin_Normal_B_hs02816517089511   
SAGE_Urothelium_normal_B_hs02393114307161   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115811   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P110287311   
SAGE_Bone_Marrow_Normal_FS_hs0404484254760   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880400   
SAGE_Lymph_node_Lymphoma_B_hs01964791481230   
SAGE_Skin_Cancer_B_hs02803618498180   
SAGE_Skin_Cancer_B_hs02833692239180   
SAGE_Skin_Melanoma_B_hs02754128221140   
SAGE_Skin_Normal_B_hs02775269789260