Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: TCAACTTCTG

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Colon_adenocarcinoma_CL_Caco26068293306   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE10205353232225   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531451156   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS75199337142   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE16218214155142   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_DCIS66617646139   
SAGE_Leukocytes_normal_B_14787332133   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N481048765689131   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS68145253130   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021359354903286110   
SAGE_Peritoneum_normal_B_13535272697   
SAGE_Brain_normal_leptomeninges_B_AL2724733493   
SAGE_Breast_normal_stroma_AP_1791523793   
SAGE_Testis_Embyronal_Carcinoma_B_1663522884   
SAGE_Brain_meningioma_grade_II_B_SF3622448571880   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_1570232277   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC1777593077   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE172762039266   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N47189093859462   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC29540801762   
SAGE_Kidney_carcinoma_B_D21002813161   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE112092326360   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE152211016356   
SAGE_Placenta_hydatidiform_mole_B_11016772855   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE142121705551   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE192016685150   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES92244885448   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC9635391547   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE2523421245   
SAGE_Breast_carcinoma_associated_stroma_B_IDC7680241544   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS6570491242   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC7690061440   
SAGE_Brain_medulloblastoma_CL_mhh-147858937   
SAGE_Breast_normal_epithelium_CD44+_AP_N2560081035   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE132724654935   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N5811007864192134   
SAGE_Bone_marrow_normal_B_D0136577632   
SAGE_Breast_normal_stroma_B_IDC850485831   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA0938461429   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES24014326029   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741057828   
SAGE_Testis_Embryonal_Carcinoma_CL_hs0212637016189328   
SAGE_Brain_glioblastoma_B_H8331006001427   
SAGE_Breast_carcinoma_MD_LCIS67834926   
SAGE_White_Blood_Cells_normal_breast_associated_CD45+_AP31985425   
SAGE_Breast_carcinoma_metastasis_B_249794624   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P11028731223   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+61519722   
SAGE_Brain_normal_cortex_B_pool662451722   
SAGE_Breast_normal_epithelium_CD44+_AP_N580464922   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517351722   
SAGE_GallBladder_Adenocarcinoma_B_C0181380922   
SAGE_Placenta_first_trimester_normal_B_1892651022   
SAGE_Brain_ependymoma_B_H58068614720   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_07020259575620   
SAGE_Brain_ependymoma_B_R58252189519   
SAGE_Brain_normal_cortex_B_BB54294233919   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC2852781518   
SAGE_Brain_astrocytoma_grade_II_B_H5011283091117   
SAGE_Kidney_embryonic_CL_293+beta-catenin23519217   
SAGE_Brain_glioblastoma_B_R7099099816   
SAGE_Skin_normal_B_NS36615316   
SAGE_Stomach_adenocarcinoma_MD_HS2958831516   
SAGE_Brain_astrocytoma_grade_III_B_R140118733915   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC965935515   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC352478415   
SAGE_Lung_normal_B_188708715   
SAGE_Ovary_endometriosis_CL_E1276097615   
SAGE_Retina_Macula_normal_B_4Mac101417815   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE77262615   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE90199715   
SAGE_Universal_reference_human_RNA_CL51729415   
SAGE_Brain_normal_cerebellum_B_BB54240500314   
SAGE_Embryonic_stem_cell_normal_CL_hs0238363608326614   
SAGE_Ovary_adenocarcinoma_B_OVT-641443314   
SAGE_Brain_glioblastoma_B_GBM106259762413   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC40338124022913   
SAGE_Embryo_Pre-Cancer_B_hs0324689301646613   
SAGE_Retina_Peripheral_normal_B_159661413   
SAGE_Retina_Retinoblastoma_B_188490613   
SAGE_White_Blood_Cells_monocyte_normal_AP_P1101158713   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC765091412   
SAGE_Retina_Peripheral_normal_B_4Peri126691812   
SAGE_Brain_astrocytoma_grade_II_B_H359105764611   
SAGE_Brain_glioblastoma_B_H1353124805711   
SAGE_Brain_glioblastoma_B_R336102322611   
SAGE_Breast_carcinoma_B_IDC-368891411   
SAGE_Pancreas_adenocarcinoma_B_91-1611333582211   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC734399211   
SAGE_White_Blood_Cells_monocytes_normal_AP_P254426311   
SAGE_Brain_astrocytoma_grade_III_B_H27296059510   
SAGE_Breast_normal_organoid_B58181310   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIEK037747210   
SAGE_Skin_Melanoma_B_hs0276563180029110   
SAGE_Thyroid_normal_B_001115938610   
SAGE_Vascular_endothelium_hemangioma_B_14675680410   
SAGE_Brain_ependymoma_B_11506237339   
SAGE_Breast_carcinoma_B_CT15_IDC2184019   
SAGE_Lung_normal_CL_L154222629   
SAGE_Skin_melanoma_B_DB24133829   
SAGE_Brain_glioblastoma_B_H13714933828   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176538   
SAGE_Brain_medulloblastoma_B_97-05-P0156997138   
SAGE_Brain_meningioma_grade_II_B_SF21764871128   
SAGE_Brain_normal_thalamus_B_12401518   
SAGE_Brain_ependymoma_B_13945631427   
SAGE_Brain_glioblastoma_B_R2010105347   
SAGE_Brain_normal_cerebellum_B_15038527   
SAGE_Brain_oligodendroglioma_B_H9882786417   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU07501937   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986247   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia7901537   
SAGE_GallBladder_Normal_B_HN8570637   
SAGE_Retina_macula_normal_B_HMAC210241747   
SAGE_Retina_normal_B_4cRet10370147   
SAGE_White_Blood_Cells_lung_macrophage_normal_AP_L15187227   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P15163427   
SAGE_Brain_Medulloblastoma_CL_UW228-N9493736   
SAGE_Brain_fetal_normal_B_S1305546106   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC2737965681286   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-26616826   
SAGE_Breast_normal_B_gestational hyperplasia16170426   
SAGE_Cartilage_chondrosarcoma_grade_1_CL_UIIC03308116   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX08843936   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896236   
SAGE_Ovary_adenocarcinoma_B_OVT-83198716   
SAGE_Pancreas_normal_CS_HX3198516   
SAGE_Stomach_adenocarcinoma_B_G2346492526   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991336   
SAGE_Brain_astrocytoma_grade_III_B_58410300835   
SAGE_Brain_astrocytoma_grade_III_B_R92710734435   
SAGE_Brain_astrocytoma_grade_II_B_H51610811635   
SAGE_Brain_astrocytoma_grade_II_B_H51811602235   
SAGE_Brain_ependymoma_B_R3537382225   
SAGE_Brain_glioblastoma_CL_H54+LacZ6690825   
SAGE_Brain_medulloblastoma_B_12733861415   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285725   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341025   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905325   
SAGE_GallBladder_Adenocarcinoma_B_NAM017854825   
SAGE_Lung_adenocarcinoma_MD_L93591615   
SAGE_Thyroid_follicular_adenoma_B_TT00510157835   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159524   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082724   
SAGE_Brain_astrocytoma_grade_II_B_H5638856824   
SAGE_Brain_ependymoma_B_R102312269034   
SAGE_Brain_medulloblastoma_B_H9728537624   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Kidney_embryonic_CL_293-control4195514   
SAGE_Liver_cholangiocarcinoma_B_K2D4685314   
SAGE_Lung_adenocarcinoma_MD_L108688724   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037743   
SAGE_Brain_astrocyte_normal_CL_NHA55148113   
SAGE_Brain_astrocytoma_grade_III_B_H97010698223   
SAGE_Brain_ependymoma_B_R4555182513   
SAGE_Brain_glioblastoma_B_pooled5642813   
SAGE_Brain_glioblastoma_CL_4d11521223   
SAGE_Brain_glioblastoma_CL_H3925599013   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII5698213   
SAGE_Brain_glioblastoma_control_CL_H2476042813   
SAGE_Brain_medulloblastoma_B_H3066045413   
SAGE_Breast_carcinoma_B_BWHT18_DCIS5070113   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC285795613   
SAGE_Liver_cholangiocarcinoma_B_K16031913   
SAGE_Liver_cholangiocarcinoma_CL_K35484213   
SAGE_Liver_cholangiocarcinoma_CL_K45297313   
SAGE_Lymph_node_Lymphoma_B_hs02045178993823   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Peripheral_Blood_Cancer_B_hs042957568481133   
SAGE_Prostate_adenocarcinoma_MD_PR3176495113   
SAGE_Spinal_cord_normal_B_15478513   
SAGE_Thyroid_follicular_carcinoma_B_TT00412466423   
SAGE_Vascular_normal_CS_control5164213   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165623   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P25029713   
SAGE_Bone_Marrow_Normal_FS_hs04044842547702   
SAGE_Brain_ependymoma_B_R5108407312   
SAGE_Brain_ependymoma_B_R5127537912   
SAGE_Brain_glioblastoma_B_H11106898612   
SAGE_Brain_glioblastoma_B_H1425C8899012   
SAGE_Brain_meningioma_grade_I_B_SF42716925312   
SAGE_Brain_normal_peds_cortex_B_H15717755412   
SAGE_Breast_carcinoma_B_95-3476707012   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC87396712   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918412   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N57617312   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK08594412   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen7928412   
SAGE_Skin_Cancer_B_hs02795703298752   
SAGE_Skin_Melanoma_B_hs02754128221562   
SAGE_Stomach_adenocarcinoma_MD_HG79371412   
SAGE_Uterus_normal_B_hs01953718463412   
SAGE_White_Blood_Cells_monocytes_normal_AP_A29878612   
SAGE_Brain_astrocytoma_grade_III_B_40710831211   
SAGE_Brain_astrocytoma_grade_III_B_H105510988611   
SAGE_Brain_astrocytoma_grade_II_B_H53010243911   
SAGE_Brain_ependymoma_B_R62812043111   
SAGE_Brain_glioblastoma_CL_28d11062411   
SAGE_Brain_glioblastoma_CL_stem_cells10841411   
SAGE_Eye_Retinoblastoma_B_hs038912434232691   
SAGE_Retina_Peripheral_normal_B_210531211   
SAGE_Skin_Melanoma_B_hs02733881770341   
SAGE_Skin_Melanoma_B_hs02743895211341   
SAGE_Uterus_Normal_B_hs01946452623521   
SAGE_Vein_normal_B_hs02306755622421   
SAGE_Bladder_Cancer_B_hs0240621642620   
SAGE_Bladder_Cancer_B_hs02645833968220   
SAGE_Bladder_Cancer_B_hs0266424461220   
SAGE_Breast_Carcinoma_CD24+_C2_IDC34472096010   
SAGE_Breast_Carcinoma_CD24+_C4_IDC40357091090   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC31420875580   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880160   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N351358422320   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N47303600220   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227410   
SAGE_Peripheral_Blood_Cancer_B_hs0430639970540   
SAGE_Skin_Cancer_B_hs0280361849860   
SAGE_Skin_Cancer_B_hs02833692239120   
SAGE_Skin_Cancer_B_hs0284389250730   
SAGE_Skin_Normal_B_hs02724397550100   
SAGE_Skin_Normal_B_hs0277526978950   
SAGE_Skin_Normal_B_hs0278304222140   
SAGE_Skin_Normal_B_hs0281651708940   
SAGE_Vein_normal_B_hs02376135688280