Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: GTTATTGAGG

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176540111   
SAGE_Prostate_carcinoma_CL_LNCaP602502273   
SAGE_Prostate_normal_B_2640582268   
SAGE_Prostate_carcinoma_CL_LNCaP-C400291154   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT621601651   
SAGE_Colon_normal_B_NC2484791145   
SAGE_Brain_normal_leptomeninges_B_AL2724731644   
SAGE_Brain_glioblastoma_control_CL_H247604281343   
SAGE_Prostate_carcinoma_B_pool2660341442   
SAGE_Brain_medulloblastoma_CL_mhh-1478581041   
SAGE_Brain_meningioma_grade_II_B_SF2176487111041   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC29540801140   
SAGE_Brain_ependymoma_B_1394563141139   
SAGE_Ovary_normal_CL_IOSE29EC-1147159938   
SAGE_Brain_ependymoma_B_R512753791437   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia790531537   
SAGE_Ovary_normal_CS_HOSE_447728937   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H607251136   
SAGE_Brain_glioblastoma_B_H8331006001835   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia790151435   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE102053533635   
SAGE_Brain_ependymoma_B_R45551825934   
SAGE_Kidney_embryonic_CL_293+beta-catenin23519434   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE152211013733   
SAGE_Prostate_carcinoma_CL_LNCaP-T43542732   
SAGE_Stomach_adenocarcinoma_MD_HG7937141532   
SAGE_Pancreas_normal_CS_HX31985531   
SAGE_Brain_ependymoma_B_R58252189830   
SAGE_Prostate_carcinoma_CL_PC3_Mock38819630   
SAGE_Brain_ependymoma_B_R10231226901829   
SAGE_Colon_normal_B_NC149610728   
SAGE_Kidney_embryonic_CL_293-control41955628   
SAGE_Stomach_carcinoma_B_G18963075928   
SAGE_Brain_glioblastoma_CL_stem_cells1084141527   
SAGE_Bladder_Cancer_B_hs0240621642681626   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIEK037747526   
SAGE_Esophagus_Normal_B_CN01756341026   
SAGE_Brain_meningioma_grade_I_B_SF446554647725   
SAGE_Brain_astrocytoma_grade_II_B_H5011283091523   
SAGE_Brain_glioblastoma_B_R3361023221223   
SAGE_Stomach_carcinoma_B_xenograph_X4351620623   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC734399423   
SAGE_Bladder_Cancer_B_hs0241333580138322   
SAGE_Brain_medulloblastoma_B_98-13-P30145342522   
SAGE_Embryonic_stem_cell_normal_CL_hs0238363608341022   
SAGE_Skin_Cancer_B_hs0283369223941822   
SAGE_Stomach_normal_B_antrum26653322   
SAGE_Brain_ependymoma_B_R35373822821   
SAGE_Brain_medulloblastoma_CL_4-HCR66599721   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE162182142421   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE132724652921   
SAGE_Esophagus_Dysplasia_B_LGD0174904821   
SAGE_Prostate_adenocarcinoma_MD_PR31764951721   
SAGE_Stomach_adenocarcinoma_B_G23464925721   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA972911020   
SAGE_Brain_glioblastoma_B_H111068986720   
SAGE_Brain_meningioma_grade_III_B_SF236659786620   
SAGE_Foreskin_normal_B_hs0305394035041320   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE250132519   
SAGE_Ovary_adenocarcinoma_B_OVT-641443419   
SAGE_Prostate_carcinoma_CL_A+30298319   
SAGE_Prostate_normal_epithelium_CS_senescent71717719   
SAGE_Thyroid_follicular_carcinoma_B_TT0041246641219   
SAGE_Vascular_normal_CS_control51642519   
SAGE_Breast_normal_myoepithelium_CL_HME5055516518   
SAGE_Cartilage_chondrosarcoma_grade_1_CL_UIIC033081318   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIGE077757718   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE172762032518   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE112092321918   
SAGE_Muscle_normal_B_old53889518   
SAGE_Muscle_normal_B_young53947518   
SAGE_Peritoneum_mesothelioma_B_1232529318   
SAGE_Brain_ependymoblastoma_B_81933975317   
SAGE_Brain_meningioma_grade_II_B_SF362244857417   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP78785717   
SAGE_Prostate_adenocarcinoma_CL_LNCaP22344217   
SAGE_Thyroid_normal_B_0011159381017   
SAGE_Brain_astrocytoma_grade_III_B_439107824916   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h60162516   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE142121701816   
SAGE_Lung_adenocarcinoma_B_136256316   
SAGE_Pancreas_adenocarcinoma_CL_Panc124749216   
SAGE_Prostate_normal_MD_PR31759277516   
SAGE_Stomach_normal_MD_14S73353616   
SAGE_Brain_astrocytoma_grade_III_B_584103008815   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741030915   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N1563994515   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU075019615   
SAGE_Colon_adenocarcinoma_CL_RKO51294415   
SAGE_Esophagus_Dysplasia_B_HGD0278611615   
SAGE_GallBladder_Adenocarcinoma_B_NAM0178548615   
SAGE_Liver_cholangiocarcinoma_CL_K452973415   
SAGE_Ovary_endometriosis_CL_E1276097615   
SAGE_Urothelium_normal_B_hs0239311430724815   
SAGE_Brain_astrocytoma_grade_III_B_82899939714   
SAGE_Colon_adenocarcinoma_B_Tu9841371314   
SAGE_Brain_astrocytoma_grade_III_B_R140118733813   
SAGE_Brain_glioblastoma_B_H1425C88990613   
SAGE_Colon_adenocarcinoma_CL_SW83761148413   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517351013   
SAGE_Retina_normal_B_4cRet103701713   
SAGE_Uterus_Normal_B_hs0194645262343413   
SAGE_Brain_Medulloblastoma_CL_UW228-N94937612   
SAGE_Brain_astrocytoma_grade_II_B_H516108116712   
SAGE_Brain_ependymoma_B_23946653312   
SAGE_Brain_glioblastoma_B_H137149338312   
SAGE_Brain_glioblastoma_CS_TA246678312   
SAGE_Brain_medulloblastoma_CL_D28366316412   
SAGE_Brain_oligodendroglioma_B_100132442212   
SAGE_Breast_carcinoma_B_IDC-464095412   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC866520412   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES92244881412   
SAGE_Heart_normal_B_183063512   
SAGE_Ovary_adenocarcinoma_B_OVT-831987212   
SAGE_Skin_Cancer_B_hs0280361849822112   
SAGE_Skin_Normal_B_hs0282441163628412   
SAGE_Testis_Embryonal_Carcinoma_CL_hs0213593549036912   
SAGE_Brain_astrocyte_normal_CL_NHA551481311   
SAGE_Brain_ependymoma_B_R628120431711   
SAGE_Breast_carcinoma_B_BWHT18_DCIS50701311   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC352478311   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE252342311   
SAGE_Breast_normal_FS_NER34565211   
SAGE_Breast_normal_stroma_B_IDC850485311   
SAGE_GallBladder_Normal_B_HN85706511   
SAGE_Lung_adenocarcinoma_MD_L1086887511   
SAGE_Lymph_Node_Lymphoma_B_172008411   
SAGE_Ovary_adenocarcinoma_B_OVT-753514311   
SAGE_Pelvis_mixoid_chondrosarcoma_grade2_B_UIHT083577511   
SAGE_Prostate_normal_epithelium_CS_confluent71897411   
SAGE_Skin_Cancer_B_hs0279570329833411   
SAGE_Skin_Cancer_B_hs0284389250723111   
SAGE_Skin_Normal_B_hs0271580768633411   
SAGE_Stomach_carcinoma_B_xenograft_X10169749411   
SAGE_Universal_reference_human_RNA_CL51729311   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A153795311   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P151634311   
SAGE_Brain_astrocytoma_grade_I_B_H104375922410   
SAGE_Brain_glioblastoma_CL_4d115212610   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII56982310   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC773410410   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP75147410   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N576173410   
SAGE_Colon_adenocarcinoma_CL_HCT11655641310   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM098962510   
SAGE_White_Blood_Cells_monocytes_normal_AP_A298786510   
SAGE_Bladder_Cancer_B_hs026546401982259   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159549   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-8639149   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082749   
SAGE_Brain_astrocytoma_grade_II_B_H5638856849   
SAGE_Brain_glioblastoma_CL_28d11062459   
SAGE_Breast_Carcinoma_CD24+_C1_IDC3142866042069   
SAGE_Breast_carcinoma_B_CT15_IDC2184019   
SAGE_Breast_metastatic_carcinoma_B_LN26034339   
SAGE_Colon_adenocarcinoma_CL_Caco26068239   
SAGE_Liver_normal_B_16630839   
SAGE_Lymph_node_Lymphoma_B_hs019647914812299   
SAGE_Prostate_carcinoma_CL_PC3_AS24076829   
SAGE_Retina_Macula_normal_B_4Mac10141759   
SAGE_Retina_Retinoblastoma_B_18849049   
SAGE_Skin_Normal_B_hs027243975502129   
SAGE_Thyroid_follicular_adenoma_B_TT00510157859   
SAGE_Bladder_Cancer_B_hs026642446121858   
SAGE_Bone_Marrow_Normal_FS_hs040448425472068   
SAGE_Brain_astrocytoma_grade_III_B_H2729605948   
SAGE_Brain_ependymoma_B_H5806861438   
SAGE_Brain_glioblastoma_B_R709909948   
SAGE_Brain_meningioma_grade_I_B_SF42716925338   
SAGE_Brain_normal_thalamus_B_12401518   
SAGE_Breast_Carcinoma_CD24+_C2_IDC3447209601928   
SAGE_Breast_carcinoma_CL_MDA435C4727028   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N14872928   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC76900638   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2401432188   
SAGE_Stomach_normal_MD_13S4590828   
SAGE_Stomach_normal_epithelium_B_body12476118   
SAGE_Uterus_normal_B_hs019537184631608   
SAGE_Bone_Marrow_Cancer_FS_hs040549000371947   
SAGE_Brain_astrocytoma_grade_III_B_H97010698247   
SAGE_Brain_glioblastoma_B_pooled5642827   
SAGE_Brain_normal_peds_cortex_B_H15717755437   
SAGE_Brain_oligodendroglioma_B_H9882786417   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC3142087551537   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N25051227   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen7928437   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE1920166887   
SAGE_Retina_Peripheral_normal_B_4Peri12669157   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726237   
SAGE_Skin_Melanoma_B_hs027438952111387   
SAGE_Spinal_cord_normal_B_15478527   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021263701612507   
SAGE_Vascular_endothelium_hemangioma_B_1467568037   
SAGE_Vein_normal_B_hs023067556222657   
SAGE_Brain_Medulloblastoma_CL_425C26264226   
SAGE_Brain_astrocytoma_grade_II_B_H12711448946   
SAGE_Brain_ependymoma_B_11506237326   
SAGE_Brain_medulloblastoma_B_98-04-P1173257016   
SAGE_Brain_medulloblastoma_B_H3066045426   
SAGE_Brain_medulloblastoma_B_H4845746926   
SAGE_Brain_normal_cortex_B_BB5429423336   
SAGE_Brain_normal_cortex_B_pool66245126   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509126   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918436   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC96593526   
SAGE_Breast_normal_B_gestational hyperplasia16170426   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK08594436   
SAGE_Muscle_Rhabdomyosarcoma_B_16127026   
SAGE_Pancreas_carcinoma_CL_ASPC3122416   
SAGE_Skin_Melanoma_B_hs027541282211396   
SAGE_Skin_Normal_B_hs028165170892236   
SAGE_Testis_Embyronal_Carcinoma_B_16635226   
SAGE_Vascular_normal_CS_VEGF+5731626   
SAGE_Brain_astrocytoma_grade_III_B_34310015835   
SAGE_Brain_astrocytoma_grade_III_B_40710831235   
SAGE_Brain_astrocytoma_grade_II_B_H38810628535   
SAGE_Brain_astrocytoma_grade_II_B_H51811602235   
SAGE_Brain_astrocytoma_grade_II_B_H53010243935   
SAGE_Brain_medulloblastoma_B_97-05-P3127429525   
SAGE_Brain_medulloblastoma_B_C6097461225   
SAGE_Breast_Carcinoma_CD24+_C4_IDC4035709101045   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N58110078643165   
SAGE_Breast_carcinoma_B_95-3476707025   
SAGE_Breast_carcinoma_B_IDC-36889125   
SAGE_Breast_carcinoma_associated_stroma_B_IDC76802425   
SAGE_Breast_normal_stroma_AP_17915225   
SAGE_Cartilage_chondrosarcoma_grade_3_CL_UIIA06802125   
SAGE_Esophagus_Adenocarcinoma_B_CA1D7379325   
SAGE_Lymph_node_Lymphoma_B_hs020451789931335   
SAGE_Pancreas_adenocarcinoma_B_91-161133358215   
SAGE_Peripheral_Blood_Cancer_B_hs042957568481635   
SAGE_Skin_Melanoma_B_hs027338817701165   
SAGE_Skin_normal_B_NS3661515   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P110287335   
SAGE_Bladder_Cancer_B_hs026458339681444   
SAGE_Brain_glioblastoma_B_H135312480534   
SAGE_Brain_medulloblastoma_B_98-05-P0408925824   
SAGE_Brain_medulloblastoma_B_98-05-P6084845114   
SAGE_Brain_medulloblastoma_B_98-09-P5588598424   
SAGE_Brain_medulloblastoma_CL_H3414392014   
SAGE_Brain_normal_substantia_nigra_B_14177314   
SAGE_Breast_carcinoma_CL_MDA435H484032314   
SAGE_Breast_carcinoma_MD_DCIS4078314   
SAGE_Breast_metastatic_carcinoma_B_LN14508714   
SAGE_Breast_normal_epithelium_CD24+_AP_N24155114   
SAGE_GallBladder_Adenocarcinoma_B_C018138024   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Kidney_normal_B_14099314   
SAGE_Lung_normal_CL_L154222614   
SAGE_Peripheral_Blood_Cancer_B_hs043063997051484   
SAGE_Placenta_first_trimester_normal_B_18926524   
SAGE_Skin_Normal_B_hs027752697891204   
SAGE_Skin_Normal_B_hs02783042221634   
SAGE_Skin_melanoma_B_DB24133814   
SAGE_Stomach_adenocarcinoma_MD_G3294680214   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+6151913   
SAGE_Brain_astrocytoma_grade_III_B_H105510988623   
SAGE_Brain_astrocytoma_grade_III_B_R92710734423   
SAGE_Brain_astrocytoma_grade_II_B_H35910576423   
SAGE_Brain_fetal_normal_B_S130554663   
SAGE_Brain_glioblastoma_B_R2010105323   
SAGE_Brain_glioblastoma_CL_H3925599013   
SAGE_Brain_medulloblastoma_B_96-04-P0195264513   
SAGE_Brain_medulloblastoma_B_H13225949813   
SAGE_Breast_carcinoma_B_DCIS-46060513   
SAGE_Breast_carcinoma_B_IDC-56045113   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC96353913   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS65704913   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC285795613   
SAGE_Breast_fibroadenoma_MD5568813   
SAGE_Breast_normal_epithelium_CD44+_AP_N25600813   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N15722213   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986223   
SAGE_Colon_adenocarcinoma_B_Tu1025570013   
SAGE_Eye_Retinoblastoma_B_hs0389124342322413   
SAGE_Kidney_carcinoma_B_D210028123   
SAGE_Liver_cholangiocarcinoma_B_K16031913   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Peritoneum_normal_B_135352713   
SAGE_Retina_Peripheral_normal_B_210531223   
SAGE_Stomach_adenocarcinoma_MD_HS295883113   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_15702313   
SAGE_Vein_normal_B_hs02376135688983   
SAGE_White_Blood_Cells_lung_macrophage_normal_AP_L15187213   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115823   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165623   
SAGE_White_Blood_Cells_monocytes_normal_AP_P25442613   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P25029713   
SAGE_Brain_medulloblastoma_B_97-05-P0156997112   
SAGE_Brain_medulloblastoma_B_DL76839212   
SAGE_Brain_medulloblastoma_B_H2757231812   
SAGE_Brain_medulloblastoma_B_H8766740412   
SAGE_Brain_medulloblastoma_B_H9728537612   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568492   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240412   
SAGE_Breast_carcinoma_MD_LCIS6783412   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS68145212   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC87396712   
SAGE_Breast_normal_epithelium_MUC1+_AP_N157170412   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA09384612   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX08843912   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Normal_Oxygen8039812   
SAGE_Lung_normal_B_18870812   
SAGE_Lymph_Node_normal_B_19942612   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019912   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC17775912   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991312   
SAGE_Retina_macula_normal_B_HMAC210241711   
SAGE_Skin_Melanoma_B_hs02765631800531   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N33964688050   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N3513584223120   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N473036002140   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227410   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N47189093820   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N48104876520   
SAGE_Embryo_Pre-Cancer_B_hs03246893016260