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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


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Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

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in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-357402827   
SAGE_Esophagus_Adenocarcinoma_B_CA1D73793924   
SAGE_Uterus_normal_B_hs0195371846343423   
SAGE_Brain_meningioma_grade_I_B_SF446554647621   
SAGE_Brain_meningioma_grade_I_B_SF427169253720   
SAGE_Brain_ependymoblastoma_B_81933975317   
SAGE_Brain_medulloblastoma_B_H87667404514   
SAGE_Kidney_embryonic_CL_293-control41955314   
SAGE_Prostate_carcinoma_CL_LNCaP-C40029314   
SAGE_Brain_astrocytoma_grade_II_B_H530102439713   
SAGE_Brain_meningioma_grade_II_B_SF362244857313   
SAGE_Esophagus_Dysplasia_B_LGD0174904513   
SAGE_Liver_cholangiocarcinoma_B_K160319413   
SAGE_Brain_medulloblastoma_B_H141361853412   
SAGE_Brain_medulloblastoma_B_96-04-P01952645311   
SAGE_Brain_medulloblastoma_B_H27572318411   
SAGE_Skin_Cancer_B_hs0279570329831811   
SAGE_Thyroid_follicular_adenoma_B_TT005101578611   
SAGE_Brain_astrocytoma_grade_III_B_82899939510   
SAGE_Brain_astrocytoma_grade_I_B_H104375922410   
SAGE_Breast_fibroadenoma_MD55688310   
SAGE_Esophagus_Dysplasia_B_HGD0278611410   
SAGE_Placenta_normal_B_1118083610   
SAGE_Retina_Peripheral_normal_B_159661310   
SAGE_Brain_glioblastoma_CL_28d11062459   
SAGE_Brain_normal_cerebellum_B_BB5424050029   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC86652039   
SAGE_Breast_metastatic_carcinoma_B_LN26034339   
SAGE_Lung_adenocarcinoma_MD_L108688749   
SAGE_Prostate_normal_B_26405839   
SAGE_Retina_normal_B_4cRet10370159   
SAGE_Skin_Melanoma_B_hs027656318002599   
SAGE_Brain_ependymoma_B_2394665328   
SAGE_Brain_glioblastoma_B_H1425C8899048   
SAGE_Brain_glioblastoma_CL_H54+LacZ6690838   
SAGE_Colon_normal_B_NC14961028   
SAGE_Lymph_node_Lymphoma_B_hs020451789932258   
SAGE_Brain_astrocytoma_grade_III_B_40710831247   
SAGE_Brain_astrocytoma_grade_III_B_R92710734447   
SAGE_Brain_ependymoma_B_R5127537937   
SAGE_Brain_glioblastoma_B_R2010105347   
SAGE_Brain_glioblastoma_CL_stem_cells10841447   
SAGE_Brain_medulloblastoma_B_DL58367137   
SAGE_Heart_normal_B_18306337   
SAGE_Liver_cholangiocarcinoma_CL_K35484227   
SAGE_Peritoneum_normal_B_135352727   
SAGE_Uterus_Normal_B_hs019464526232547   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115847   
SAGE_White_Blood_Cells_monocytes_normal_AP_P25442627   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+6151926   
SAGE_Brain_astrocytoma_grade_III_B_R14011873346   
SAGE_Brain_glioblastoma_B_R709909936   
SAGE_Brain_medulloblastoma_B_H13225949826   
SAGE_Brain_meningioma_grade_III_B_SF23665978626   
SAGE_Breast_carcinoma_B_DCIS-46060526   
SAGE_Breast_carcinoma_B_IDC-56045126   
SAGE_Breast_normal_B_gestational hyperplasia16170426   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N15722226   
SAGE_Lung_normal_B_18870836   
SAGE_Ovary_adenocarcinoma_B_OVT-83198716   
SAGE_Pancreas_carcinoma_CL_PL452955716   
SAGE_Pancreas_normal_CS_H1263222316   
SAGE_Pancreas_normal_CS_HX3198516   
SAGE_Prostate_adenocarcinoma_MD_PR3176495126   
SAGE_Retina_Retinoblastoma_B_18849036   
SAGE_Stomach_adenocarcinoma_B_G2346492526   
SAGE_Testis_Embyronal_Carcinoma_B_16635226   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991336   
SAGE_Brain_astrocytoma_grade_III_B_H105510988635   
SAGE_Brain_astrocytoma_grade_II_B_H51610811635   
SAGE_Brain_ependymoma_B_H5806861425   
SAGE_Brain_fetal_normal_B_S130554685   
SAGE_Brain_glioblastoma_CL_4d11521235   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176525   
SAGE_Brain_medulloblastoma_B_97-05-P3127429525   
SAGE_Brain_normal_leptomeninges_B_AL27247325   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N481802274545   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N471890938515   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N481048765275   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N58110078642825   
SAGE_Breast_carcinoma_B_95-3476707025   
SAGE_Esophagus_Normal_B_CN017563425   
SAGE_GallBladder_Adenocarcinoma_B_NAM017854825   
SAGE_Kidney_carcinoma_B_D210028135   
SAGE_Retina_macula_normal_B_HMAC210241735   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726225   
SAGE_Skin_Normal_B_hs027243975501205   
SAGE_Stomach_normal_MD_14S7335325   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729124   
SAGE_Brain_ependymoma_B_R5108407324   
SAGE_Brain_ependymoma_B_R62812043134   
SAGE_Brain_glioblastoma_CS_TA24667814   
SAGE_Brain_medulloblastoma_B_98-05-P0408925824   
SAGE_Brain_medulloblastoma_B_H9728537624   
SAGE_Brain_meningioma_grade_II_B_SF21764871114   
SAGE_Breast_carcinoma_B_DCIS-54309814   
SAGE_Breast_carcinoma_CL_MDA435H244663114   
SAGE_Breast_normal_epithelium_CD24+_AP_N154143014   
SAGE_Breast_normal_epithelium_CD24+_AP_N24155114   
SAGE_Eye_lens_B_UIHI08589824   
SAGE_Foreskin_normal_B_hs03053940350894   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Liver_cholangiocarcinoma_B_K2D4685314   
SAGE_Lymph_Node_normal_B_19942624   
SAGE_Ovary_normal_CL_IOSE29EC-114715914   
SAGE_Prostate_carcinoma_CL_LNCaP-T4354214   
SAGE_Prostate_carcinoma_CL_PC3_AS24076814   
SAGE_Skin_Melanoma_B_hs02754128221994   
SAGE_Stomach_adenocarcinoma_MD_G3294680214   
SAGE_Stomach_adenocarcinoma_MD_HG79371424   
SAGE_Brain_astrocytoma_grade_III_B_43910782423   
SAGE_Brain_astrocytoma_grade_III_B_58410300823   
SAGE_Brain_astrocytoma_grade_III_B_H10205157313   
SAGE_Brain_astrocytoma_grade_II_B_H35910576423   
SAGE_Brain_astrocytoma_grade_II_B_H38810628523   
SAGE_Brain_astrocytoma_grade_II_B_H50112830923   
SAGE_Brain_astrocytoma_grade_II_B_H51811602223   
SAGE_Brain_glioblastoma_B_H135312480523   
SAGE_Brain_medulloblastoma_B_H3066045413   
SAGE_Brain_medulloblastoma_B_H4845746913   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N473036002553   
SAGE_Breast_carcinoma_B_IDC-46409513   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509113   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC295408013   
SAGE_Breast_normal_myoepithelium_CL_HME505551613   
SAGE_Breast_normal_stroma_B_IDC85048513   
SAGE_Colon_adenocarcinoma_CL_RKO5129413   
SAGE_Colon_adenocarcinoma_CL_SW8376114813   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES115173533   
SAGE_Muscle_Rhabdomyosarcoma_B_16127013   
SAGE_Muscle_normal_B_old5388913   
SAGE_Muscle_normal_B_young5394713   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Placenta_hydatidiform_mole_B_110167723   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT6216013   
SAGE_Prostate_normal_MD_PR3175927713   
SAGE_Retina_Peripheral_normal_B_4Peri12669123   
SAGE_Spinal_cord_normal_B_15478513   
SAGE_Stomach_carcinoma_B_G1896307513   
SAGE_Stomach_carcinoma_B_xenograph_X435162013   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021359354901083   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531413   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_15702313   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A15379513   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P15163413   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082712   
SAGE_Brain_astrocytoma_grade_III_B_H2729605912   
SAGE_Brain_ependymoma_B_R3537382212   
SAGE_Brain_medulloblastoma_B_97-05-P0156997112   
SAGE_Brain_medulloblastoma_B_98-09-P5588598412   
SAGE_Brain_normal_peds_cortex_B_H15717755412   
SAGE_Breast_Carcinoma_CD24+_C2_IDC344720960482   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240452   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285712   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918412   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341012   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP7878512   
SAGE_Breast_normal_epithelium_CD24+_AP_N57646912   
SAGE_Breast_normal_epithelium_MUC1+_AP_N157170412   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA09384612   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK08594412   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES922448832   
SAGE_GallBladder_Adenocarcinoma_B_C018138012   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb6698812   
SAGE_GallBladder_Normal_B_HN8570612   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896212   
SAGE_Lymph_node_Lymphoma_B_hs01964791481542   
SAGE_Prostate_normal_epithelium_CS_senescent7171712   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019912   
SAGE_Skin_Cancer_B_hs02833692239522   
SAGE_Skin_Normal_B_hs02715807686662   
SAGE_Skin_Normal_B_hs02775269789662   
SAGE_Skin_Normal_B_hs02783042221392   
SAGE_Skin_Normal_B_hs02816517089942   
SAGE_Vascular_endothelium_hemangioma_B_1467568012   
SAGE_Bladder_Cancer_B_hs02413335801231   
SAGE_Bladder_Cancer_B_hs02645833968521   
SAGE_Bladder_Cancer_B_hs02654640198341   
SAGE_Brain_astrocytoma_grade_III_B_H97010698211   
SAGE_Brain_astrocytoma_grade_II_B_H12711448911   
SAGE_Brain_ependymoma_B_R102312269011   
SAGE_Brain_glioblastoma_B_H83310060011   
SAGE_Brain_glioblastoma_B_R33610232211   
SAGE_Breast_Carcinoma_CD24+_C3_IDC384117410321   
SAGE_Breast_Carcinoma_CD24+_C4_IDC403570910301   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880851   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N35135842231231   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE1920166821   
SAGE_Eye_Retinoblastoma_B_hs038912434232911   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848551   
SAGE_Peripheral_Blood_Cancer_B_hs04306399705481   
SAGE_Retina_Macula_normal_B_4Mac10141711   
SAGE_Skin_Cancer_B_hs02803618498341   
SAGE_Skin_Cancer_B_hs02843892507291   
SAGE_Skin_Melanoma_B_hs02733881770301   
SAGE_Skin_Melanoma_B_hs02743895211241   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161631   
SAGE_Thyroid_follicular_carcinoma_B_TT00412466411   
SAGE_Thyroid_normal_B_00111593811   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165611   
SAGE_Bladder_Cancer_B_hs02406216426170   
SAGE_Bladder_Cancer_B_hs02664244612160   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037190   
SAGE_Bone_Marrow_Normal_FS_hs04044842547170   
SAGE_Breast_Carcinoma_CD24+_C1_IDC314286604170   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568130   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC314208755150   
SAGE_Embryo_Pre-Cancer_B_hs03246893016220   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217010   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE1621821410   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES240143210   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535310   
SAGE_Embryonic_stem_cell_normal_CL_hs02383636083150   
SAGE_Skin_Normal_B_hs02824411636210   
SAGE_Urothelium_normal_B_hs02393114307110   
SAGE_Vein_normal_B_hs02306755622270   
SAGE_Vein_normal_B_hs02376135688150