Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: GTCTTACTTT

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Brain_medulloblastoma_B_127338614631   
SAGE_Ovary_carcinoma_CL_A278021369328   
SAGE_Kidney_carcinoma_B_D21002811427   
SAGE_Brain_ependymoma_B_23946653625   
SAGE_Breast_carcinoma_B_95-25939364525   
SAGE_Ovary_cystadenoma_CL_ML10-1055144725   
SAGE_Brain_astrocytoma_grade_III_B_R9271073441222   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE901991022   
SAGE_Brain_astrocytoma_grade_III_B_5841030081121   
SAGE_Brain_glioblastoma_B_H8331006001121   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517351621   
SAGE_Brain_astrocytoma_grade_III_B_4391078241120   
SAGE_Brain_ependymoma_B_115062373619   
SAGE_Breast_carcinoma_CL_MDA435H4840323419   
SAGE_Ovary_carcinoma_CL_ES2-131159319   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT62160619   
SAGE_Prostate_carcinoma_CL_PC3_AS240768419   
SAGE_Vascular_normal_CS_control51642519   
SAGE_Brain_astrocytoma_grade_III_B_H9701069821018   
SAGE_Liver_cholangiocarcinoma_CL_K452973518   
SAGE_Lung_normal_B_188708818   
SAGE_Lung_normal_CL_L1542226418   
SAGE_Prostate_carcinoma_B_pool266034618   
SAGE_Brain_ependymoma_B_139456314517   
SAGE_Brain_glioblastoma_B_H1425C88990817   
SAGE_Brain_medulloblastoma_B_98-13-P30145342417   
SAGE_Breast_carcinoma_B_95-34767070617   
SAGE_Liver_cholangiocarcinoma_B_K2D46853417   
SAGE_Brain_astrocytoma_grade_III_B_407108312916   
SAGE_Brain_astrocytoma_grade_III_B_82899939816   
SAGE_Brain_astrocytoma_grade_III_B_R1401187331016   
SAGE_Brain_medulloblastoma_B_98-05-P60848451416   
SAGE_Prostate_carcinoma_CL_LNCaP60250516   
SAGE_Stomach_normal_MD_14S73353616   
SAGE_Brain_astrocytoma_grade_III_B_343100158815   
SAGE_Brain_medulloblastoma_B_98-05-P04089258715   
SAGE_Ovary_endometriosis_CL_E1276097615   
SAGE_Pancreas_adenocarcinoma_CL_CAPAN137674315   
SAGE_Prostate_carcinoma_CL_PC3_Mock38819315   
SAGE_Prostate_normal_B_264058515   
SAGE_Brain_medulloblastoma_B_H87667404514   
SAGE_Heart_normal_B_183063614   
SAGE_Prostate_carcinoma_CL_LNCaP-C40029314   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H60725413   
SAGE_Retina_Peripheral_normal_B_2105312713   
SAGE_Vascular_endothelium_hemangioma_B_14675680513   
SAGE_Brain_astrocytoma_grade_III_B_H1055109886712   
SAGE_Brain_astrocytoma_grade_II_B_H516108116712   
SAGE_Brain_glioblastoma_B_H1353124805812   
SAGE_Brain_medulloblastoma_B_98-04-P11732570212   
SAGE_Breast_carcinoma_CL_ZR75_1_untreated32303212   
SAGE_Ovary_normal_CL_IOSE29EC-1147159312   
SAGE_Thyroid_follicular_carcinoma_B_TT004124664812   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-86391511   
SAGE_Brain_astrocyte_normal_CL_NHA551481311   
SAGE_Brain_ependymoblastoma_B_81933975211   
SAGE_Brain_ependymoma_B_R45551825311   
SAGE_Brain_ependymoma_B_R58252189311   
SAGE_Brain_medulloblastoma_B_H97285376511   
SAGE_Lung_adenocarcinoma_MD_L935916211   
SAGE_Retina_Macula_normal_B_4Mac101417611   
SAGE_Retina_macula_normal_B_HMAC2102417611   
SAGE_Stomach_carcinoma_B_xenograft_X10169749411   
SAGE_Brain_astrocytoma_grade_II_B_H518116022610   
SAGE_Brain_glioblastoma_B_GBM106259762310   
SAGE_Brain_normal_cortex_B_BB54294233510   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIEK037747210   
SAGE_Colon_adenocarcinoma_CL_HCT11655641310   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE77262410   
SAGE_Spinal_cord_normal_B_154785310   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159549   
SAGE_Brain_astrocytoma_grade_II_B_H35910576459   
SAGE_Brain_astrocytoma_grade_II_B_H53010243959   
SAGE_Brain_medulloblastoma_B_98-09-P5588598449   
SAGE_Brain_medulloblastoma_B_H3066045439   
SAGE_Brain_medulloblastoma_CL_4-HCR6659939   
SAGE_Brain_normal_cerebellum_B_BB5424050029   
SAGE_Breast_carcinoma_B_IDC-56045139   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h6016239   
SAGE_Breast_metastatic_carcinoma_B_LN26034339   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK08594449   
SAGE_Fibroblasts_CL_postcrisis2183319   
SAGE_Prostate_carcinoma_CL_LNCaP-T4354229   
SAGE_Skin_Melanoma_B_hs027338817701889   
SAGE_Uterus_endometrium_normal_CS_DI12199119   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531439   
SAGE_Bladder_Cancer_B_hs026546401982078   
SAGE_Brain_astrocytoma_grade_III_B_H2729605948   
SAGE_Brain_astrocytoma_grade_II_B_H12711448958   
SAGE_Brain_ependymoma_B_R62812043158   
SAGE_Brain_glioblastoma_B_H11106898638   
SAGE_Brain_medulloblastoma_B_97-05-P3127429538   
SAGE_Brain_medulloblastoma_B_C6097461238   
SAGE_Brain_medulloblastoma_B_DL76839238   
SAGE_Brain_medulloblastoma_B_H2757231838   
SAGE_Brain_medulloblastoma_CL_mhh-14785828   
SAGE_Brain_meningioma_grade_II_B_SF36224485728   
SAGE_Breast_carcinoma_CL_MDA435C4727028   
SAGE_Breast_carcinoma_CL_MDA435H244663128   
SAGE_Ovary_normal_CS_HOSE_44772828   
SAGE_Pancreas_adenocarcinoma_CL_Panc12474918   
SAGE_Placenta_normal_B_111808358   
SAGE_Vein_normal_B_hs023761356882658   
SAGE_Bladder_Cancer_B_hs026642446121697   
SAGE_Brain_astrocytoma_grade_II_B_H38810628547   
SAGE_Brain_astrocytoma_grade_II_B_H50112830957   
SAGE_Brain_astrocytoma_grade_I_B_H10437592237   
SAGE_Brain_ependymoma_B_R5127537937   
SAGE_Brain_glioblastoma_B_R2010105347   
SAGE_Brain_glioblastoma_B_R33610232247   
SAGE_Brain_medulloblastoma_B_96-04-P0195264527   
SAGE_Brain_normal_cerebellum_B_15038527   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986247   
SAGE_Colon_adenocarcinoma_CL_RKO5129427   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2401432157   
SAGE_Liver_cholangiocarcinoma_CL_K35484227   
SAGE_Muscle_normal_B_young5394727   
SAGE_Peritoneum_normal_B_135352727   
SAGE_Stomach_carcinoma_B_xenograph_X435162027   
SAGE_Stomach_normal_B_antrum2665317   
SAGE_Thyroid_follicular_adenoma_B_TT00510157847   
SAGE_Universal_reference_human_RNA_CL5172927   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_15702327   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A15379527   
SAGE_Bladder_Cancer_B_hs026458339681766   
SAGE_Brain_normal_cortex_B_pool66245126   
SAGE_Breast_carcinoma_CL_MCF7control_0h5987726   
SAGE_Breast_normal_B_gestational hyperplasia16170426   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N156399426   
SAGE_Breast_normal_organoid_B5818126   
SAGE_Colon_adenocarcinoma_CL_Caco26068226   
SAGE_Eye_lens_B_UIHI08589836   
SAGE_Lung_normal_CL_L162898316   
SAGE_Lymph_Node_normal_B_19942636   
SAGE_Ovary_adenocarcinoma_B_OVT-83198716   
SAGE_Pancreas_adenocarcinoma_B_96-62523321316   
SAGE_Pancreas_carcinoma_CL_PL452955716   
SAGE_Pancreas_normal_CS_H1263222316   
SAGE_Peritoneum_mesothelioma_B_123252916   
SAGE_Placenta_first_trimester_normal_B_18926536   
SAGE_Prostate_adenocarcinoma_MD_PR3176495126   
SAGE_Retina_Peripheral_normal_B_15966126   
SAGE_Skin_Melanoma_B_hs027438952111186   
SAGE_Skin_Melanoma_B_hs027541282211266   
SAGE_Stomach_adenocarcinoma_B_G2346492526   
SAGE_Stomach_adenocarcinoma_MD_HG79371436   
SAGE_Vascular_normal_CS_VEGF+5731626   
SAGE_Bladder_Cancer_B_hs024133358011005   
SAGE_Bone_marrow_normal_B_D013657715   
SAGE_Brain_ependymoma_B_H5806861425   
SAGE_Brain_glioblastoma_CL_H54+LacZ6690825   
SAGE_Brain_medulloblastoma_B_97-05-P0156997125   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285725   
SAGE_Breast_normal_FS_NER3456515   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622725   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU07501925   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905325   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb6698825   
SAGE_Thyroid_normal_B_00111593835   
SAGE_Uterus_normal_B_hs01953718463965   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729124   
SAGE_Brain_astrocytoma_grade_II_B_H5638856824   
SAGE_Brain_glioblastoma_B_H13714933814   
SAGE_Brain_glioblastoma_CS_TA24667814   
SAGE_Brain_medulloblastoma_B_98-04-P4944306814   
SAGE_Brain_medulloblastoma_B_DL58367124   
SAGE_Brain_meningioma_grade_II_B_SF21764871114   
SAGE_Breast_carcinoma_MD_DCIS4078314   
SAGE_Breast_metastatic_carcinoma_B_LN14508714   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N14872914   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX08843924   
SAGE_Colon_adenocarcinoma_B_Tu984137114   
SAGE_Colon_normal_B_NC14961014   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE1920166854   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535354   
SAGE_Embryonic_stem_cell_normal_CL_hs02383636083834   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Retina_Peripheral_normal_B_4Peri12669134   
SAGE_Skin_Cancer_B_hs027957032981414   
SAGE_Skin_Normal_B_hs027158076861214   
SAGE_Skin_Normal_B_hs028244116361044   
SAGE_Brain_ependymoma_B_R102312269023   
SAGE_Brain_fetal_normal_B_S130554653   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII5698213   
SAGE_Brain_glioblastoma_CL_stem_cells10841423   
SAGE_Brain_medulloblastoma_B_H14136185313   
SAGE_Brain_medulloblastoma_B_H4845746913   
SAGE_Brain_meningioma_grade_III_B_SF23665978613   
SAGE_Brain_meningioma_grade_I_B_SF44655464713   
SAGE_Breast_Carcinoma_CD24+_C1_IDC314286604733   
SAGE_Breast_Carcinoma_CD24+_C3_IDC384117410653   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC314208755763   
SAGE_Breast_carcinoma_B_DCIS-46060513   
SAGE_Breast_carcinoma_B_IDC-46409513   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS75199313   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS65704913   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-35740213   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC35247813   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE25234213   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N25051213   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N15722213   
SAGE_Breast_normal_myoepithelium_CL_HME505551613   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP010831923   
SAGE_Colon_adenocarcinoma_B_Tu1025570013   
SAGE_Colon_adenocarcinoma_CL_SW8376114813   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE1727620353   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE1327246553   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE1120923243   
SAGE_Liver_normal_B_16630813   
SAGE_Prostate_normal_MD_PR3175927713   
SAGE_Retina_normal_B_4cRet10370123   
SAGE_Skin_Melanoma_B_hs02765631800973   
SAGE_Skin_Normal_B_hs02724397550763   
SAGE_Stomach_adenocarcinoma_MD_HS295883113   
SAGE_Stomach_carcinoma_B_G1896307513   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082712   
SAGE_Brain_ependymoma_B_R3537382212   
SAGE_Brain_ependymoma_B_R5108407312   
SAGE_Brain_glioblastoma_B_R709909912   
SAGE_Brain_meningioma_grade_I_B_SF42716925312   
SAGE_Brain_normal_leptomeninges_B_AL27247312   
SAGE_Brain_normal_peds_cortex_B_H15717755412   
SAGE_Breast_Carcinoma_CD24+_C4_IDC403570910452   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240482   
SAGE_Breast_carcinoma_MD_LCIS6783412   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC87396712   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918412   
SAGE_Breast_normal_epithelium_CD44+_AP_N58046412   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen7928412   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217032   
SAGE_Esophagus_Adenocarcinoma_B_CA1D7379312   
SAGE_Esophagus_Normal_B_CN017563412   
SAGE_GallBladder_Normal_B_HN8570612   
SAGE_Lung_adenocarcinoma_MD_L108688712   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896212   
SAGE_Lymph_node_Lymphoma_B_hs01964791481542   
SAGE_Lymph_node_Lymphoma_B_hs02045178993652   
SAGE_Pelvis_mixoid_chondrosarcoma_grade2_B_UIHT08357712   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848672   
SAGE_Prostate_normal_epithelium_CS_confluent7189712   
SAGE_Prostate_normal_epithelium_CS_senescent7171712   
SAGE_Skin_Normal_B_hs02816517089922   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161762   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02135935490682   
SAGE_Urothelium_normal_B_hs02393114307402   
SAGE_Bladder_Cancer_B_hs02406216426381   
SAGE_Bone_Marrow_Normal_FS_hs04044842547261   
SAGE_Brain_glioblastoma_CL_28d11062411   
SAGE_Brain_glioblastoma_CL_4d11521211   
SAGE_Breast_Carcinoma_CD24+_C2_IDC344720960291   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568331   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N471890938101   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N5811007864801   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE1522110121   
SAGE_Eye_Retinoblastoma_B_hs0389124342321011   
SAGE_Foreskin_normal_B_hs03053940350361   
SAGE_Peripheral_Blood_Cancer_B_hs04306399705371   
SAGE_Skin_Normal_B_hs02775269789481   
SAGE_Skin_Normal_B_hs02783042221291   
SAGE_Uterus_Normal_B_hs01946452623531   
SAGE_Vein_normal_B_hs02306755622391   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165611   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P110287311   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037230   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880100   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N351358422350   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N47303600250   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227440   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N48104876530   
SAGE_Embryo_Pre-Cancer_B_hs03246893016130   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE1621821410   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES922448810   
SAGE_Skin_Cancer_B_hs02803618498170   
SAGE_Skin_Cancer_B_hs02833692239150   
SAGE_Skin_Cancer_B_hs02843892507130