Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: GCCAAAAAAA

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Breast_carcinoma_MD_DCIS407831783   
SAGE_Breast_carcinoma_CL_MDA435H24466311772   
SAGE_Breast_carcinoma_CL_ZR75_1_estrogen387971472   
SAGE_Breast_carcinoma_metastasis_B_2497941872   
SAGE_Brain_glioblastoma_B_GBM1062597622066   
SAGE_Breast_carcinoma_B_DCIS-4606052066   
SAGE_Brain_medulloblastoma_B_96-04-P019526451764   
SAGE_Breast_carcinoma_CL_MDA435H48403231364   
SAGE_Breast_carcinoma_CL_ZR75_1_tamoxifen400521364   
SAGE_Prostate_normal_epithelium_CS_confluent718972363   
SAGE_Breast_Carcinoma_CD24+_C4_IDC403570910104358   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-2661681957   
SAGE_Brain_medulloblastoma_B_C609746122156   
SAGE_Prostate_adenocarcinoma_CL_LNCaP22344653   
SAGE_Brain_medulloblastoma_B_H972853762149   
SAGE_Prostate_normal_epithelium_CS_senescent717171747   
SAGE_Brain_medulloblastoma_B_97-05-P015699711645   
SAGE_Brain_medulloblastoma_B_98-05-P608484511145   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N1487291145   
SAGE_Liver_cholangiocarcinoma_CL_K4529731245   
SAGE_Breast_carcinoma_associated_stroma_B_IDC7680241544   
SAGE_Prostate_carcinoma_B_LN-122599544   
SAGE_Breast_carcinoma_CL_MCF7control_0h598771343   
SAGE_Kidney_normal_B_140993943   
SAGE_White_Blood_Cells_normal_breast_associated_CD45+_AP31985743   
SAGE_Breast_carcinoma_CL_MDA435C472701042   
SAGE_Brain_medulloblastoma_B_98-04-P49443068941   
SAGE_Breast_normal_organoid_B581811241   
SAGE_Liver_cholangiocarcinoma_CL_K3548421140   
SAGE_Pancreas_adenocarcinoma_CL_Panc124749540   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N2505121039   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h601621136   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS6728571335   
SAGE_Brain_medulloblastoma_B_98-05-P040892581533   
SAGE_Breast_metastatic_carcinoma_B_LN2603431033   
SAGE_Brain_glioblastoma_B_H13531248052032   
SAGE_Breast_Carcinoma_CD24+_C2_IDC34472096076232   
SAGE_Peritoneum_mesothelioma_B_1232529530   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS6814521229   
SAGE_Leukocytes_normal_B_147873729   
SAGE_Lymph_node_Lymphoma_B_hs0196479148171029   
SAGE_Ovary_normal_CS_HOSE_447728729   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A153795829   
SAGE_Stomach_carcinoma_B_xenograft_X101697491028   
SAGE_Brain_medulloblastoma_B_H275723181027   
SAGE_Breast_carcinoma_B_DCIS-543098627   
SAGE_Universal_reference_human_RNA_CL51729727   
SAGE_Uterus_endometrium_normal_CS_DI121991327   
SAGE_Ovary_adenocarcinoma_B_OVT-753514726   
SAGE_Brain_medulloblastoma_B_H141361853825   
SAGE_Pancreas_carcinoma_CL_ASPC31224425   
SAGE_Brain_medulloblastoma_B_98-04-P11732570424   
SAGE_Brain_medulloblastoma_CL_D28366316824   
SAGE_Breast_carcinoma_CL_ZR75_1_untreated32303424   
SAGE_Liver_normal_B_166308824   
SAGE_Prostate_carcinoma_CL_LNCaP-C40029524   
SAGE_Brain_ependymoblastoma_B_81933975423   
SAGE_Breast_carcinoma_B_IDC-560451723   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_07020259575723   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_P151634623   
SAGE_Brain_medulloblastoma_CL_H34143920522   
SAGE_Breast_metastatic_carcinoma_B_LN145087522   
SAGE_Colon_adenocarcinoma_CL_SW83761148722   
SAGE_Lung_adenocarcinoma_B_136256422   
SAGE_Placenta_normal_B_11180831322   
SAGE_Prostate_carcinoma_CL_LNCaP-T43542522   
SAGE_Retina_Peripheral_normal_B_21053121222   
SAGE_Breast_normal_myoepithelium_CL_HME5055516621   
SAGE_Retina_macula_normal_B_HMAC21024171121   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_157023621   
SAGE_Brain_glioblastoma_B_H111068986720   
SAGE_Brain_medulloblastoma_B_DL768392720   
SAGE_Breast_carcinoma_B_95-25939364420   
SAGE_Lung_normal_CL_L1628983320   
SAGE_Prostate_carcinoma_CL_PC3_Mock38819420   
SAGE_Brain_Medulloblastoma_CL_425C262642619   
SAGE_Brain_medulloblastoma_B_H30660454619   
SAGE_Brain_normal_substantia_nigra_B_141773419   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC40338124033319   
SAGE_Breast_normal_epithelium_CD24+_AP_N241551419   
SAGE_Stomach_carcinoma_B_xenograph_X4351620519   
SAGE_Brain_astrocytoma_grade_III_B_R9271073441018   
SAGE_Brain_normal_peds_cortex_B_H157177554718   
SAGE_Breast_carcinoma_B_CT15_IDC21840218   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC963539618   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC965935618   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD01098621018   
SAGE_Fibroblasts_CL_postcrisis21833218   
SAGE_Ovary_adenocarcinoma_B_OVT-831987318   
SAGE_Ovary_carcinoma_CL_A278021369218   
SAGE_Peritoneum_normal_B_1353527518   
SAGE_Rheumatoid_arthritis_synovial_fibroblast_CS42472418   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_DCIS666176618   
SAGE_Brain_astrocytoma_grade_III_B_343100158917   
SAGE_Brain_glioblastoma_B_H1425C88990817   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII56982517   
SAGE_Breast_carcinoma_MD_LCIS67834617   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC2857956517   
SAGE_Breast_normal_stroma_AP_179152717   
SAGE_Vascular_normal_CS_VEGF+57316517   
SAGE_Brain_medulloblastoma_B_97-05-P31274295616   
SAGE_Brain_medulloblastoma_B_98-09-P55885984716   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC873967616   
SAGE_Ovary_normal_CL_IOSE29EC-1147159416   
SAGE_Retina_Peripheral_normal_B_159661516   
SAGE_Vein_normal_B_hs0237613568851016   
SAGE_Brain_astrocytoma_grade_II_B_H518116022915   
SAGE_Brain_astrocytoma_grade_II_B_H56388568715   
SAGE_Brain_ependymoma_B_R51275379615   
SAGE_Brain_medulloblastoma_CL_4-HCR66599515   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741031715   
SAGE_Breast_carcinoma_B_IDC-464095515   
SAGE_Colon_adenocarcinoma_CL_RKO51294415   
SAGE_Ovary_endometriosis_CL_E1276097615   
SAGE_Pancreas_adenocarcinoma_CL_CAPAN137674315   
SAGE_Prostate_adenocarcinoma_MD_PR31764951515   
SAGE_Stomach_carcinoma_B_G18963075515   
SAGE_Brain_glioblastoma_CL_H54+LacZ66908514   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS657049414   
SAGE_Lung_normal_CL_L1542226314   
SAGE_Testis_Embryonal_Carcinoma_CL_hs0212637016146014   
SAGE_White_Blood_Cells_monocytes_normal_AP_P254426414   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H60725413   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS789184613   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N157222413   
SAGE_Prostate_carcinoma_CL_A+30298213   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P1102873713   
SAGE_Bladder_Cancer_B_hs0266424461226612   
SAGE_Brain_glioblastoma_B_H137149338312   
SAGE_Brain_normal_cortex_B_BB54294233612   
SAGE_Brain_normal_cortex_B_pool662451412   
SAGE_Liver_cholangiocarcinoma_B_K2D46853312   
SAGE_Lymph_Node_normal_B_199426612   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC177759512   
SAGE_Brain_astrocyte_normal_CL_NHA551481311   
SAGE_Brain_astrocytoma_grade_III_B_H102051573311   
SAGE_Brain_ependymoma_B_R45551825311   
SAGE_Brain_ependymoma_B_R58252189311   
SAGE_Brain_glioblastoma_B_R336102322611   
SAGE_Breast_carcinoma_B_95-34767070411   
SAGE_Breast_normal_FS_NER34565211   
SAGE_Breast_normal_stroma_B_IDC850485311   
SAGE_Eye_lens_B_UIHI085898511   
SAGE_Kidney_carcinoma_B_D2100281611   
SAGE_Lung_adenocarcinoma_MD_L935916211   
SAGE_Lymph_node_Lymphoma_B_hs0204517899330311   
SAGE_Skin_Normal_B_hs0271580768633511   
SAGE_Thyroid_follicular_carcinoma_B_TT004124664711   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC734399211   
SAGE_Brain_Medulloblastoma_CL_UW228-N94937510   
SAGE_Brain_astrocytoma_grade_III_B_H27296059510   
SAGE_Brain_ependymoma_B_R35373822410   
SAGE_Brain_glioblastoma_CL_H39255990310   
SAGE_Brain_medulloblastoma_B_H48457469310   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC2639361210   
SAGE_Breast_fibroadenoma_MD55688310   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE192016681110   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES1151735810   
SAGE_Skin_Melanoma_B_hs0275412822121210   
SAGE_Skin_normal_B_NS36615210   
SAGE_Spinal_cord_normal_B_154785310   
SAGE_Stomach_adenocarcinoma_MD_HS2958831310   
SAGE_Vein_normal_B_hs0230675562235510   
SAGE_Bladder_Cancer_B_hs026458339682649   
SAGE_Bladder_Cancer_B_hs026546401982199   
SAGE_Brain_astrocytoma_grade_III_B_40710831259   
SAGE_Brain_astrocytoma_grade_III_B_58410300859   
SAGE_Brain_astrocytoma_grade_II_B_H35910576459   
SAGE_Brain_astrocytoma_grade_II_B_H53010243959   
SAGE_Brain_ependymoma_B_R5108407349   
SAGE_Brain_medulloblastoma_B_DL58367149   
SAGE_Colon_adenocarcinoma_CL_Caco26068239   
SAGE_Prostate_carcinoma_CL_PC3_AS24076829   
SAGE_Skin_Normal_B_hs027243975502199   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021359354902889   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115859   
SAGE_Bladder_Cancer_B_hs024133358011508   
SAGE_Brain_glioblastoma_B_R709909948   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176538   
SAGE_Brain_medulloblastoma_CL_mhh-14785828   
SAGE_Breast_carcinoma_B_IDC-36889138   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341038   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC76900638   
SAGE_Colon_normal_B_NC24847928   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES922448898   
SAGE_Placenta_first_trimester_normal_B_18926548   
SAGE_Skin_Melanoma_B_hs027438952111728   
SAGE_Stomach_adenocarcinoma_MD_G3294680228   
SAGE_Stomach_normal_MD_13S4590828   
SAGE_Stomach_normal_MD_14S7335338   
SAGE_Urothelium_normal_B_hs023931143071268   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159537   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082737   
SAGE_Brain_astrocytoma_grade_II_B_H51610811647   
SAGE_Brain_astrocytoma_grade_I_B_H10437592237   
SAGE_Brain_glioblastoma_B_R2010105347   
SAGE_Brain_normal_cerebellum_B_15038527   
SAGE_Brain_oligodendroglioma_B_H9882786417   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS75199327   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC295408027   
SAGE_Colon_adenocarcinoma_CL_HCT1165564127   
SAGE_GallBladder_Adenocarcinoma_B_C018138037   
SAGE_GallBladder_Adenocarcinoma_B_NAM017854837   
SAGE_Muscle_normal_B_old5388927   
SAGE_Retina_Macula_normal_B_4Mac10141747   
SAGE_Retina_Peripheral_normal_B_4Peri12669157   
SAGE_Retina_Pigment_epithelium_normal_B_15366627   
SAGE_Skin_melanoma_B_DB12603217   
SAGE_Vascular_normal_CS_control5164227   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P25029727   
SAGE_Brain_astrocytoma_grade_III_B_R14011873346   
SAGE_Brain_astrocytoma_grade_II_B_H12711448946   
SAGE_Brain_ependymoma_B_R102312269046   
SAGE_Brain_ependymoma_B_R62812043146   
SAGE_Brain_glioblastoma_CL_4d11521246   
SAGE_Brain_glioblastoma_control_CL_H2476042826   
SAGE_Brain_oligodendroglioma_B_10013244216   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC86652026   
SAGE_Breast_normal_B_gestational hyperplasia16170426   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2401432136   
SAGE_Embryonic_stem_cell_normal_CL_hs023836360831206   
SAGE_Liver_cholangiocarcinoma_B_K16031926   
SAGE_Lung_normal_B_18870836   
SAGE_Pancreas_adenocarcinoma_B_96-62523321316   
SAGE_Pancreas_carcinoma_CL_PL452955716   
SAGE_Prostate_carcinoma_B_pool26603426   
SAGE_Prostate_carcinoma_CL_LNCaP6025026   
SAGE_Skin_Cancer_B_hs028336922391236   
SAGE_Skin_Melanoma_B_hs027338817701196   
SAGE_Stomach_adenocarcinoma_MD_HG79371436   
SAGE_Thyroid_normal_B_00111593846   
SAGE_Uterus_normal_B_hs019537184631206   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531426   
SAGE_Brain_glioblastoma_B_H83310060035   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC3142087551165   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP010831935   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217065   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE1327246585   
SAGE_Esophagus_Dysplasia_B_HGD027861125   
SAGE_Skin_Cancer_B_hs027957032981495   
SAGE_Thyroid_follicular_adenoma_B_TT00510157835   
SAGE_Vascular_endothelium_hemangioma_B_1467568025   
SAGE_Bladder_Cancer_B_hs024062164261394   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-8639124   
SAGE_Brain_astrocytoma_grade_III_B_8289993924   
SAGE_Brain_ependymoma_B_2394665314   
SAGE_Brain_glioblastoma_CS_TA24667814   
SAGE_Brain_medulloblastoma_B_98-13-P3014534214   
SAGE_Brain_meningioma_grade_II_B_SF36224485714   
SAGE_Breast_Carcinoma_CD24+_C1_IDC3142866041054   
SAGE_Colon_adenocarcinoma_B_Tu984137114   
SAGE_Colon_normal_B_NC14961014   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE1727620364   
SAGE_GallBladder_Normal_B_HN8570624   
SAGE_Lung_adenocarcinoma_MD_L108688724   
SAGE_Ovary_adenocarcinoma_B_OVT-64144314   
SAGE_Peripheral_Blood_Cancer_B_hs043063997051554   
SAGE_Retina_Retinoblastoma_B_18849024   
SAGE_Skin_Melanoma_B_hs027656318001284   
SAGE_Uterus_Normal_B_hs019464526231414   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991324   
SAGE_Bone_Marrow_AML_FS_CD34+CD38+6151913   
SAGE_Brain_astrocytoma_grade_III_B_H105510988623   
SAGE_Brain_astrocytoma_grade_II_B_H50112830923   
SAGE_Brain_ependymoma_B_11506237313   
SAGE_Brain_ependymoma_B_13945631413   
SAGE_Brain_fetal_normal_B_S130554663   
SAGE_Brain_glioblastoma_B_pooled5642813   
SAGE_Brain_glioblastoma_CL_28d11062423   
SAGE_Brain_medulloblastoma_B_H13225949813   
SAGE_Brain_meningioma_grade_I_B_SF44655464713   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-35740213   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE25013213   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE25234213   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC285278113   
SAGE_Embryo_Pre-Cancer_B_hs032468930161143   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE1522110143   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535343   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE1120923243   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848903   
SAGE_Placenta_hydatidiform_mole_B_110167723   
SAGE_Prostate_normal_B_26405813   
SAGE_Prostate_normal_MD_PR3175927713   
SAGE_Skin_Cancer_B_hs02843892507653   
SAGE_Skin_Normal_B_hs02824411636803   
SAGE_Stomach_adenocarcinoma_B_G2346492513   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037522   
SAGE_Bone_Marrow_Normal_FS_hs04044842547622   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729112   
SAGE_Brain_ependymoma_B_H5806861412   
SAGE_Brain_medulloblastoma_B_H8766740412   
SAGE_Brain_normal_leptomeninges_B_AL27247312   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568462   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA09384612   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK08594412   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905312   
SAGE_Esophagus_Adenocarcinoma_B_CA1D7379312   
SAGE_Esophagus_Dysplasia_B_LGD017490412   
SAGE_Esophagus_Normal_B_CN017563412   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb6698812   
SAGE_Heart_normal_B_18306312   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726212   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019912   
SAGE_Skin_Cancer_B_hs02803618498492   
SAGE_White_Blood_Cells_monocytes_normal_AP_A29878612   
SAGE_Brain_astrocytoma_grade_III_B_43910782411   
SAGE_Brain_astrocytoma_grade_III_B_H97010698211   
SAGE_Brain_astrocytoma_grade_II_B_H38810628511   
SAGE_Brain_glioblastoma_CL_stem_cells10841411   
SAGE_Eye_Retinoblastoma_B_hs038912434232981   
SAGE_Foreskin_normal_B_hs03053940350261   
SAGE_Skin_Normal_B_hs02775269789361   
SAGE_Skin_Normal_B_hs02783042221241   
SAGE_Skin_Normal_B_hs02816517089431   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N33964688070   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N3513584223120   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227440   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N48104876520   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N5811007864110