Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: CCGCTGATCC

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Breast_Normal_Epithelium_CD44+_N5_N47189093882587   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N48104876535968   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX0884392352   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIFK0859442046   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP01083192444   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIGE0777571743   
SAGE_Brain_glioblastoma_CL_H392559901139   
SAGE_Cartilage_chondrosarcoma_grade_2_CL_UIFU0750191437   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880175736   
SAGE_Ovary_carcinoma_CL_ES2-131159532   
SAGE_Ovary_endometriosis_CL_E12760971231   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC352478830   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD01098621730   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N5811007864159628   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIEK037747526   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_157023621   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_DCIS666176721   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP78785820   
SAGE_Lung_normal_CL_L1628983320   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N48180227417319   
SAGE_Prostate_carcinoma_CL_PC3_AS240768419   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC2852781518   
SAGE_Lung_normal_CL_L1542226418   
SAGE_Ovary_cystadenoma_CL_ML10-1055144518   
SAGE_Stomach_carcinoma_B_xenograft_X10169749617   
SAGE_Colon_normal_B_NC149610416   
SAGE_Colon_normal_B_NC248479416   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N3513584223102715   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N576173615   
SAGE_GallBladder_Adenocarcinoma_B_NAM0178548615   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS681452614   
SAGE_Rheumatoid_arthritis_synovial_fibroblast_CS42472314   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N157222413   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_07020259575413   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES92244881513   
SAGE_Breast_carcinoma_CL_ZR75_1_untreated32303212   
SAGE_Breast_normal_epithelium_CD44+_AP_N580464512   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N1563994412   
SAGE_Ovary_normal_CL_IOSE29EC-1147159312   
SAGE_Pancreas_adenocarcinoma_B_96-625233213212   
SAGE_Stomach_adenocarcinoma_MD_G32946802312   
SAGE_Testis_Embyronal_Carcinoma_B_166352412   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS665314412   
SAGE_Brain_astrocyte_normal_CL_NHA551481311   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741022711   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N47303600218011   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS751993311   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC2954080311   
SAGE_Breast_normal_epithelium_MUC1+_AP_N1571704411   
SAGE_Lung_adenocarcinoma_MD_L1086887511   
SAGE_Vascular_normal_CS_control51642311   
SAGE_Colon_adenocarcinoma_B_Tu10255700310   
SAGE_Colon_adenocarcinoma_CL_HCT11655641310   
SAGE_Stomach_adenocarcinoma_MD_HG793714510   
SAGE_Brain_ependymoma_B_11506237339   
SAGE_Brain_medulloblastoma_CL_D2836631639   
SAGE_Breast_carcinoma_CL_ZR75_1_tamoxifen4005229   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509139   
SAGE_Breast_normal_epithelium_CD24+_AP_N154143029   
SAGE_Fibroblasts_CL_postcrisis2183319   
SAGE_Ovary_adenocarcinoma_B_OVT-64144329   
SAGE_Uterus_endometrium_normal_CS_DI12199119   
SAGE_Brain_glioblastoma_hypoxia_CL_H2477176538   
SAGE_Brain_meningioma_grade_I_B_SF42716925338   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N14872928   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC76900638   
SAGE_Cartilage_chondrosarcoma_grade_3_CL_UIIA06802138   
SAGE_Kidney_embryonic_CL_293+beta-catenin2351918   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896248   
SAGE_Ovary_normal_CS_HOSE_44772828   
SAGE_Pancreas_adenocarcinoma_CL_Panc12474918   
SAGE_Brain_ependymoma_B_R4555182527   
SAGE_Brain_ependymoma_B_R5825218927   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE25013227   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP7514737   
SAGE_Breast_fibroadenoma_MD5568827   
SAGE_Breast_normal_epithelium_CD44+_AP_N25600827   
SAGE_Pelvis_mixoid_chondrosarcoma_grade2_B_UIHT08357737   
SAGE_Breast_Carcinoma_CD24+_C1_IDC3142866041456   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC3142087551286   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC96353926   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC86652026   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE1120923276   
SAGE_Ovary_adenocarcinoma_B_OVT-83198716   
SAGE_Pancreas_normal_CS_HX3198516   
SAGE_Stomach_adenocarcinoma_B_G2346492526   
SAGE_Brain_glioblastoma_B_R33610232235   
SAGE_Brain_glioblastoma_CL_H54+LacZ6690825   
SAGE_Brain_medulloblastoma_B_97-05-P3127429525   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC87396725   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622725   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE1522110165   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE1327246575   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2401432115   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535365   
SAGE_Prostate_carcinoma_CL_PC3_Mock3881915   
SAGE_Skin_normal_B_NS3661515   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729124   
SAGE_Brain_astrocytoma_grade_III_B_8289993924   
SAGE_Brain_astrocytoma_grade_II_B_H5638856824   
SAGE_Brain_ependymoma_B_R102312269034   
SAGE_Brain_ependymoma_B_R62812043134   
SAGE_Brain_glioblastoma_B_H13714933814   
SAGE_Brain_normal_cerebellum_B_BB5424050014   
SAGE_Breast_Carcinoma_CD24+_C2_IDC3447209601144   
SAGE_Breast_carcinoma_MD_DCIS4078314   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918424   
SAGE_Breast_carcinoma_metastasis_B_24979414   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE1727620364   
SAGE_Eye_lens_B_UIHI08589824   
SAGE_Kidney_embryonic_CL_293-control4195514   
SAGE_Liver_cholangiocarcinoma_B_K2D4685314   
SAGE_Skin_melanoma_B_DB24133814   
SAGE_Stomach_normal_MD_13S4590814   
SAGE_White_Blood_Cells_monocytes_normal_AP_A29878624   
SAGE_Brain_astrocytoma_grade_III_B_43910782423   
SAGE_Brain_astrocytoma_grade_III_B_H105510988623   
SAGE_Brain_astrocytoma_grade_II_B_H50112830923   
SAGE_Brain_ependymoma_B_13945631413   
SAGE_Brain_glioblastoma_B_R2010105323   
SAGE_Brain_glioblastoma_B_pooled5642813   
SAGE_Brain_glioblastoma_control_CL_H2476042813   
SAGE_Brain_meningioma_grade_I_B_SF44655464713   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC273796568633   
SAGE_Breast_carcinoma_B_IDC-46409513   
SAGE_Breast_carcinoma_associated_stroma_B_DCIS65704913   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-35740213   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N25051213   
SAGE_Breast_normal_myoepithelium_CL_HME505551613   
SAGE_Breast_normal_stroma_B_IDC85048513   
SAGE_Colon_adenocarcinoma_CL_Caco26068213   
SAGE_Colon_adenocarcinoma_CL_RKO5129413   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217043   
SAGE_Liver_cholangiocarcinoma_B_K16031913   
SAGE_Muscle_Rhabdomyosarcoma_B_16127013   
SAGE_Muscle_normal_B_old5388913   
SAGE_Ovary_adenocarcinoma_B_OVT-75351413   
SAGE_Peritoneum_normal_B_135352713   
SAGE_Prostate_adenocarcinoma_MD_PR3176495113   
SAGE_Prostate_carcinoma_CL_LNCaP6025013   
SAGE_Prostate_normal_MD_PR3175927713   
SAGE_Stomach_adenocarcinoma_MD_HS295883113   
SAGE_Universal_reference_human_RNA_CL5172913   
SAGE_Vascular_normal_CS_VEGF+5731613   
SAGE_Vein_normal_B_hs023067556221103   
SAGE_White_Blood_Cells_lung_macrophage_normal_AP_L15187213   
SAGE_White_Blood_Cells_monocyte_depleted_mononuclear_cells_normal_AP_A15379513   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115823   
SAGE_White_Blood_Cells_monocytes_normal_AP_P25442613   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159512   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-8639112   
SAGE_Brain_Medulloblastoma_CL_UW228-N9493712   
SAGE_Brain_astrocytoma_grade_III_B_H2729605912   
SAGE_Brain_ependymoma_B_H5806861412   
SAGE_Brain_ependymoma_B_R5108407312   
SAGE_Brain_glioblastoma_B_H11106898612   
SAGE_Brain_glioblastoma_B_H1425C8899012   
SAGE_Brain_glioblastoma_B_R709909912   
SAGE_Brain_normal_cortex_B_BB5429423312   
SAGE_Brain_normal_peds_cortex_B_H15717755412   
SAGE_Breast_carcinoma_B_IDC-36889112   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285712   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341012   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia7901512   
SAGE_Esophagus_Dysplasia_B_HGD027861112   
SAGE_Esophagus_Dysplasia_B_LGD017490412   
SAGE_GallBladder_Adenocarcinoma_B_C018138012   
SAGE_Heart_normal_B_18306312   
SAGE_Lymph_Node_normal_B_19942612   
SAGE_Prostate_normal_epithelium_CS_confluent7189712   
SAGE_Skin_Cancer_B_hs02795703298792   
SAGE_Vein_normal_B_hs02376135688692   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991312   
SAGE_Bladder_Cancer_B_hs02664244612231   
SAGE_Brain_astrocytoma_grade_II_B_H51610811611   
SAGE_Brain_astrocytoma_grade_II_B_H53010243911   
SAGE_Brain_glioblastoma_B_H83310060011   
SAGE_Brain_glioblastoma_CL_28d11062411   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240291   
SAGE_Embryo_Pre-Cancer_B_hs03246893016421   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES115173511   
SAGE_Eye_Retinoblastoma_B_hs038912434232801   
SAGE_Kidney_carcinoma_B_D210028111   
SAGE_Retina_Macula_normal_B_4Mac10141711   
SAGE_Retina_Peripheral_normal_B_4Peri12669111   
SAGE_Skin_Cancer_B_hs02803618498221   
SAGE_Skin_Cancer_B_hs02843892507321   
SAGE_Skin_Melanoma_B_hs02765631800561   
SAGE_Skin_Normal_B_hs02816517089361   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02135935490471   
SAGE_Thyroid_normal_B_00111593811   
SAGE_Uterus_Normal_B_hs01946452623491   
SAGE_Uterus_normal_B_hs01953718463201   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165611   
SAGE_Bladder_Cancer_B_hs02406216426220   
SAGE_Bladder_Cancer_B_hs0264583396880   
SAGE_Bladder_Cancer_B_hs0265464019840   
SAGE_Bone_Marrow_Cancer_FS_hs0405490003720   
SAGE_Bone_Marrow_Normal_FS_hs0404484254720   
SAGE_Brain_fetal_normal_B_S130554610   
SAGE_Breast_Carcinoma_CD24+_C4_IDC40357091040   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE1621821410   
SAGE_Embryonic_stem_cell_normal_CL_hs0238363608330   
SAGE_Foreskin_normal_B_hs0305394035080   
SAGE_Lymph_node_Lymphoma_B_hs0196479148120   
SAGE_Lymph_node_Lymphoma_B_hs02045178993200   
SAGE_Skin_Cancer_B_hs0283369223980   
SAGE_Skin_Melanoma_B_hs0273388177060   
SAGE_Skin_Melanoma_B_hs0274389521160   
SAGE_Skin_Melanoma_B_hs0275412822150   
SAGE_Skin_Normal_B_hs02715807686160   
SAGE_Skin_Normal_B_hs02724397550120   
SAGE_Skin_Normal_B_hs02775269789150   
SAGE_Skin_Normal_B_hs0278304222160   
SAGE_Skin_Normal_B_hs02824411636200   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161210   
SAGE_Urothelium_normal_B_hs0239311430770