Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: CCGATTTTTA

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Breast_carcinoma_metastasis_B_2497941352   
SAGE_Lung_normal_CL_L1628983534   
SAGE_Breast_carcinoma_CL_MDA435C47270833   
SAGE_Prostate_carcinoma_CL_A+30298533   
SAGE_Breast_carcinoma_CL_MDA435H4840323629   
SAGE_Brain_meningioma_grade_II_B_SF362244857626   
SAGE_Kidney_embryonic_CL_293+beta-catenin23519325   
SAGE_Ovary_normal_CS_HOSE_447728625   
SAGE_Prostate_normal_B_264058824   
SAGE_Brain_medulloblastoma_B_98-04-P49443068523   
SAGE_Breast_carcinoma_B_DCIS-460605723   
SAGE_Rheumatoid_arthritis_synovial_fibroblast_CS42472523   
SAGE_Brain_glioblastoma_B_H1425C88990920   
SAGE_Brain_medulloblastoma_B_97-05-P01569971720   
SAGE_Prostate_carcinoma_CL_PC3_Mock38819420   
SAGE_Brain_Medulloblastoma_CL_425C262642619   
SAGE_Brain_medulloblastoma_B_H27572318719   
SAGE_Breast_normal_B_gestational hyperplasia161704619   
SAGE_Prostate_carcinoma_CL_LNCaP-C40029419   
SAGE_Brain_medulloblastoma_B_98-04-P11732570318   
SAGE_Breast_normal_myoepithelium_CL_HME5055516518   
SAGE_Fibroblasts_CL_postcrisis21833218   
SAGE_Prostate_carcinoma_B_pool266034618   
SAGE_Breast_carcinoma_CL_MDA435H2446631417   
SAGE_Breast_carcinoma_associated_stroma_B_IDC768024617   
SAGE_Colon_adenocarcinoma_CL_HCT11655641517   
SAGE_Brain_medulloblastoma_B_98-05-P60848451416   
SAGE_Colon_adenocarcinoma_CL_SW83761148516   
SAGE_Lung_adenocarcinoma_MD_L935916316   
SAGE_Prostate_normal_epithelium_CS_confluent71897616   
SAGE_Lung_normal_B_188708715   
SAGE_Pancreas_adenocarcinoma_CL_CAPAN137674315   
SAGE_Stomach_carcinoma_B_G18963075515   
SAGE_Universal_reference_human_RNA_CL51729415   
SAGE_Brain_medulloblastoma_B_H97285376614   
SAGE_Ovary_adenocarcinoma_B_OVT-641443314   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H60725413   
SAGE_Pancreas_carcinoma_CL_PL4529557213   
SAGE_Brain_medulloblastoma_CL_4-HCR66599412   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N148729312   
SAGE_Liver_normal_B_166308412   
SAGE_Ovary_carcinoma_CL_ES2-131159212   
SAGE_Pancreas_adenocarcinoma_B_96-625233213212   
SAGE_White_Blood_Cells_normal_breast_associated_CD45+_AP31985212   
SAGE_Brain_astrocytoma_grade_III_B_R927107344611   
SAGE_Brain_glioblastoma_B_R20101053611   
SAGE_Brain_medulloblastoma_B_98-05-P04089258511   
SAGE_Breast_normal_epithelium_BEREP4+_AP_N250512311   
SAGE_Colon_adenocarcinoma_CL_RKO51294311   
SAGE_Brain_glioblastoma_B_GBM106259762310   
SAGE_Brain_meningioma_grade_I_B_SF446554647310   
SAGE_Brain_normal_peds_cortex_B_H157177554410   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP78785410   
SAGE_Prostate_normal_MD_PR31759277310   
SAGE_Skin_normal_B_NS36615210   
SAGE_Stomach_adenocarcinoma_MD_HS2958831310   
SAGE_Vascular_normal_CS_VEGF+57316310   
SAGE_Brain_ependymoma_B_R102312269069   
SAGE_Breast_carcinoma_B_IDC-46409539   
SAGE_Breast_carcinoma_CL_ZR75_1_tamoxifen4005229   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-26616839   
SAGE_Breast_metastatic_carcinoma_B_LN26034339   
SAGE_Breast_normal_epithelium_CD24+_AP_N24155129   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES115173579   
SAGE_Kidney_embryonic_CL_293-control4195529   
SAGE_Ovary_carcinoma_CL_A27802136919   
SAGE_Prostate_carcinoma_CL_PC3_AS24076829   
SAGE_Uterus_endometrium_normal_CS_DI12199119   
SAGE_Vascular_endothelium_breast_carcinoma_associated_P1H12+_AP_DCIS66531439   
SAGE_Brain_astrocytoma_grade_II_B_H12711448958   
SAGE_Brain_ependymoma_B_2394665328   
SAGE_Brain_ependymoma_B_R3537382238   
SAGE_Brain_medulloblastoma_B_H8766740438   
SAGE_Brain_medulloblastoma_CL_mhh-14785828   
SAGE_Brain_meningioma_grade_II_B_SF21764871128   
SAGE_Brain_normal_cortex_B_BB5429423348   
SAGE_Brain_normal_thalamus_B_12401518   
SAGE_Breast_carcinoma_B_IDC-36889138   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341038   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES922448898   
SAGE_Pancreas_adenocarcinoma_CL_Panc12474918   
SAGE_Prostate_carcinoma_B_LN-12259918   
SAGE_Stomach_adenocarcinoma_MD_G3294680228   
SAGE_Brain_astrocytoma_grade_III_B_34310015847   
SAGE_Brain_astrocytoma_grade_II_B_H35910576447   
SAGE_Brain_astrocytoma_grade_II_B_H50112830957   
SAGE_Brain_ependymoma_B_R5108407337   
SAGE_Brain_glioblastoma_CL_H3925599027   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII5698227   
SAGE_Brain_medulloblastoma_B_DL58367137   
SAGE_Brain_normal_cerebellum_B_15038527   
SAGE_Breast_normal_stroma_AP_17915237   
SAGE_Ovary_adenocarcinoma_B_OVT-75351427   
SAGE_Ovary_cystadenoma_CL_ML10-105514427   
SAGE_Ovary_endometriosis_CL_E127609737   
SAGE_Stomach_normal_B_antrum2665317   
SAGE_Brain_glioblastoma_B_R709909936   
SAGE_Breast_Carcinoma_CD24+_C4_IDC4035709101216   
SAGE_Breast_carcinoma_B_IDC-56045126   
SAGE_Breast_carcinoma_CL_MCF7control_0h5987726   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509126   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC96353926   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918436   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC86652026   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC285795626   
SAGE_Colon_adenocarcinoma_CL_Caco26068226   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE1421217076   
SAGE_Lymph_Node_normal_B_19942636   
SAGE_Ovary_adenocarcinoma_B_OVT-83198716   
SAGE_Pancreas_carcinoma_CL_ASPC3122416   
SAGE_Peritoneum_mesothelioma_B_123252916   
SAGE_Placenta_first_trimester_normal_B_18926536   
SAGE_Placenta_normal_B_111808346   
SAGE_Prostate_adenocarcinoma_MD_PR3176495126   
SAGE_Retina_Peripheral_normal_B_15966126   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_DCIS66617626   
SAGE_Brain_astrocytoma_grade_III_B_H105510988635   
SAGE_Brain_astrocytoma_grade_III_B_R14011873335   
SAGE_Brain_astrocytoma_grade_II_B_H51811602235   
SAGE_Brain_astrocytoma_grade_II_B_H53010243935   
SAGE_Brain_glioblastoma_B_H11106898625   
SAGE_Brain_glioblastoma_CL_H54+LacZ6690825   
SAGE_Brain_glioblastoma_CL_stem_cells10841435   
SAGE_Brain_medulloblastoma_B_12733861415   
SAGE_Brain_medulloblastoma_B_DL76839225   
SAGE_Brain_normal_leptomeninges_B_AL27247325   
SAGE_Breast_Carcinoma_CD24+_C2_IDC3447209601315   
SAGE_Breast_carcinoma_B_95-2593936415   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC87396725   
SAGE_Breast_normal_epithelium_CD24+_AP_N57646925   
SAGE_Breast_normal_myoepithelium_CD10+_AP_IDC76900625   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE1727620385   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb6698825   
SAGE_GallBladder_Adenocarcinoma_B_NAM017854825   
SAGE_Lung_adenocarcinoma_B_13625615   
SAGE_Pancreas_adenocarcinoma_B_91-161133358215   
SAGE_Prostate_normal_epithelium_CS_senescent7171725   
SAGE_Stomach_carcinoma_B_xenograft_X1016974925   
SAGE_Thyroid_follicular_adenoma_B_TT00510157835   
SAGE_Thyroid_normal_B_00111593835   
SAGE_Bone_marrow_normal_AP_CD34+/CD38-/lin-8639124   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729124   
SAGE_Brain_Medulloblastoma_CL_UW228-N9493724   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082724   
SAGE_Brain_astrocytoma_grade_III_B_8289993924   
SAGE_Brain_astrocytoma_grade_II_B_H5638856824   
SAGE_Brain_ependymoma_B_R62812043134   
SAGE_Brain_glioblastoma_B_H135312480534   
SAGE_Brain_glioblastoma_CS_TA24667814   
SAGE_Brain_medulloblastoma_CL_H3414392014   
SAGE_Brain_normal_cerebellum_B_BB5424050014   
SAGE_Brain_normal_substantia_nigra_B_14177314   
SAGE_Breast_carcinoma_B_DCIS-54309814   
SAGE_Breast_carcinoma_associated_myoepithelium_CD10+_AP_DCIS68145224   
SAGE_Breast_metastatic_carcinoma_B_LN14508714   
SAGE_Colon_adenocarcinoma_B_Tu984137114   
SAGE_Colon_normal_B_NC14961014   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2401432104   
SAGE_Eye_lens_B_UIHI08589824   
SAGE_Heart_normal_B_18306324   
SAGE_Kidney_Glomeruli_Normal_B_bjballer14890514   
SAGE_Leukocytes_normal_B_14787314   
SAGE_Lung_normal_CL_L154222614   
SAGE_Lymph_node_Lymphoma_B_hs020451789931074   
SAGE_Ovary_normal_CL_IOSE29EC-114715914   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019924   
SAGE_Stomach_normal_MD_13S4590814   
SAGE_Testis_Embryonal_Carcinoma_CL_hs021359354901214   
SAGE_White_Blood_Cells_monocyte_normal_AP_A19991324   
SAGE_Bladder_Cancer_B_hs02645833968973   
SAGE_Brain_astrocyte_normal_CL_NHA55148113   
SAGE_Brain_astrocytoma_grade_III_B_40710831223   
SAGE_Brain_astrocytoma_grade_III_B_43910782423   
SAGE_Brain_astrocytoma_grade_II_B_H51610811623   
SAGE_Brain_ependymoma_B_11506237313   
SAGE_Brain_ependymoma_B_13945631413   
SAGE_Brain_ependymoma_B_R5825218913   
SAGE_Brain_glioblastoma_CL_28d11062423   
SAGE_Brain_glioblastoma_CL_4d11521223   
SAGE_Brain_glioblastoma_control_CL_H2476042813   
SAGE_Brain_medulloblastoma_B_96-04-P0195264513   
SAGE_Brain_medulloblastoma_B_H14136185313   
SAGE_Brain_medulloblastoma_B_H4845746913   
SAGE_Brain_medulloblastoma_CL_D2836631613   
SAGE_Brain_normal_cortex_B_pool66245113   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240673   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h6016213   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC96593513   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE25013213   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC285278113   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC295408013   
SAGE_Breast_fibroadenoma_MD5568813   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N15722213   
SAGE_Breast_normal_stroma_B_IDC85048513   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_0702025957513   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE1621821443   
SAGE_Liver_cholangiocarcinoma_CL_K35484213   
SAGE_Liver_cholangiocarcinoma_CL_K45297313   
SAGE_Muscle_normal_B_young5394713   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT6216013   
SAGE_Retina_Peripheral_normal_B_210531223   
SAGE_Retina_Peripheral_normal_B_4Peri12669123   
SAGE_Retina_macula_normal_B_HMAC210241723   
SAGE_Stomach_carcinoma_B_xenograph_X435162013   
SAGE_Thyroid_follicular_carcinoma_B_TT00412466423   
SAGE_Uterus_Normal_B_hs01946452623973   
SAGE_Vascular_endothelium_normal_breast_associated_P1H12+_AP_15702313   
SAGE_White_Blood_Cells_monocyte_normal_AP_P110115823   
SAGE_Bone_marrow_normal_AP_CD34+/CD38+/lin+8159512   
SAGE_Brain_fetal_normal_B_S130554642   
SAGE_Brain_medulloblastoma_B_97-05-P3127429512   
SAGE_Brain_medulloblastoma_B_98-09-P5588598412   
SAGE_Brain_medulloblastoma_B_C6097461212   
SAGE_Breast_Carcinoma_CD24+_C3_IDC384117410582   
SAGE_Breast_carcinoma_B_95-3476707012   
SAGE_Breast_carcinoma_MD_LCIS6783412   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS67285712   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP7514712   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905312   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia7901512   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE1920166832   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE1020535332   
SAGE_Retina_Retinoblastoma_B_18849012   
SAGE_Retinal_Pigment_Epithelium_normal_B_4MacRPE7726212   
SAGE_Stomach_adenocarcinoma_MD_HG79371412   
SAGE_Stomach_normal_MD_14S7335312   
SAGE_Vascular_endothelium_hemangioma_B_1467568012   
SAGE_Bladder_Cancer_B_hs02654640198431   
SAGE_Bladder_Cancer_B_hs02664244612261   
SAGE_Brain_astrocytoma_grade_II_B_H38810628511   
SAGE_Brain_glioblastoma_B_H83310060011   
SAGE_Brain_glioblastoma_B_R33610232211   
SAGE_Breast_Carcinoma_CD24+_C1_IDC314286604271   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC314208755261   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP010831911   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE1522110121   
SAGE_Kidney_carcinoma_B_D210028111   
SAGE_Lymph_node_Lymphoma_B_hs01964791481361   
SAGE_Peripheral_Blood_Cancer_B_hs04306399705511   
SAGE_Retina_normal_B_4cRet10370111   
SAGE_Skin_Cancer_B_hs02795703298351   
SAGE_Skin_Cancer_B_hs02803618498191   
SAGE_Skin_Melanoma_B_hs02754128221241   
SAGE_Skin_Melanoma_B_hs02765631800341   
SAGE_Skin_Normal_B_hs02715807686321   
SAGE_Skin_Normal_B_hs02724397550361   
SAGE_Skin_Normal_B_hs02824411636271   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161621   
SAGE_Uterus_normal_B_hs01953718463301   
SAGE_Vein_normal_B_hs02376135688521   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P110287311   
SAGE_Bladder_Cancer_B_hs02406216426140   
SAGE_Bladder_Cancer_B_hs0241333580160   
SAGE_Bone_Marrow_Cancer_FS_hs0405490003750   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC27379656820   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N351358422350   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N581100786420   
SAGE_Embryo_Pre-Cancer_B_hs0324689301630   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE1327246510   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE1120923210   
SAGE_Eye_Retinoblastoma_B_hs038912434232150   
SAGE_Foreskin_normal_B_hs03053940350130   
SAGE_Peripheral_Blood_Cancer_B_hs04295756848260   
SAGE_Skin_Cancer_B_hs02833692239180   
SAGE_Skin_Cancer_B_hs02843892507130   
SAGE_Skin_Melanoma_B_hs02733881770160   
SAGE_Skin_Melanoma_B_hs0274389521170   
SAGE_Skin_Normal_B_hs02775269789120   
SAGE_Skin_Normal_B_hs0278304222130   
SAGE_Skin_Normal_B_hs0281651708970   
SAGE_Urothelium_normal_B_hs0239311430720   
SAGE_Vein_normal_B_hs02306755622310