Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
SAGE Genie
  • Human SAGE Genie Tools
  • Downloads
  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Digital Northern Results

Search query: AACTTGATAC

Color Code                              
Tags per 200,000 <2 <4 <8 <16 <32 <64 <128 <256 <512 >512

LibraryTotal Tags
in Library
Tag CountsTags per
200,000
Color
Code
SAGE_Brain_astrocytoma_grade_II_B_H3881062854279   
SAGE_Brain_astrocytoma_grade_II_B_H5011283094468   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02126370161198262   
SAGE_Breast_carcinoma_B_DCIS-4606051756   
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP751472053   
SAGE_Brain_ependymoblastoma_B_81933975952   
SAGE_Brain_astrocytoma_grade_III_B_5841030082548   
SAGE_Spinal_cord_normal_B_1547851347   
SAGE_Brain_astrocytoma_grade_III_B_828999392040   
SAGE_Brain_glioblastoma_CL_28d1106242239   
SAGE_Breast_carcinoma_CL_MCF7estradiol_10H607251239   
SAGE_Brain_normal_cortex_B_BB542942331736   
SAGE_Brain_ependymoma_B_R510840731535   
SAGE_Brain_glioblastoma_CL_H54+LacZ669081235   
SAGE_Testis_Embryonal_Carcinoma_CL_hs02135935490104435   
SAGE_Brain_ependymoma_B_R6281204312033   
SAGE_Lung_normal_CL_L1542226733   
SAGE_Pancreas_carcinoma_CL_PL4529557533   
SAGE_Colon_adenocarcinoma_CL_Caco2606821032   
SAGE_Brain_astrocytoma_grade_III_B_H9701069821731   
SAGE_Brain_oligodendroglioma_B_100132442530   
SAGE_Brain_medulloblastoma_CL_mhh-147858729   
SAGE_Breast_carcinoma_CL_MCF7estradiol_3h60162929   
SAGE_Embryonic_stem_cell_HSF6_normal_p50_CL_SHES92244883329   
SAGE_Brain_ependymoma_B_R353738221027   
SAGE_Brain_glioblastoma_CL_4d1152121627   
SAGE_Embryonic_stem_cell_normal_CL_hs0238363608347326   
SAGE_Breast_normal_myoepithelium_CL_HME5055516725   
SAGE_Embryonic_stem_cell_HES3_normal_p16_CL_SHE102053532625   
SAGE_Ovary_carcinoma_CL_ES2-131159425   
SAGE_Brain_astrocytoma_grade_II_B_H5161081161324   
SAGE_Brain_glioblastoma_CL_H54+EGFRvIII56982724   
SAGE_Breast_normal_FS_NER34565423   
SAGE_Vascular_normal_CS_control51642623   
SAGE_Colon_adenocarcinoma_CL_HCT11655641621   
SAGE_Embryonic_stem_cell_H7_normal_p33_CL_SHE132724652921   
SAGE_Brain_astrocytoma_grade_II_B_H1271144891220   
SAGE_Embryonic_stem_cell_H1_normal_p54_CL_SHE162182142220   
SAGE_Lung_normal_CL_L1628983320   
SAGE_Brain_normal_substantia_nigra_B_141773419   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES24014324019   
SAGE_Stomach_adenocarcinoma_MD_HG793714919   
SAGE_Brain_astrocytoma_grade_II_B_H5181160221118   
SAGE_Brain_glioblastoma_CL_stem_cells1084141018   
SAGE_Brain_glioblastoma_control_CL_H24760428516   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGP0108319916   
SAGE_Pancreas_adenocarcinoma_CL_Panc124749216   
SAGE_Brain_astrocyte_normal_CL_NHA551481415   
SAGE_Brain_astrocytoma_grade_III_B_343100158815   
SAGE_Brain_astrocytoma_grade_II_B_H359105764815   
SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE152211011715   
SAGE_Brain_astrocytoma_grade_III_B_H1055109886814   
SAGE_Brain_ependymoma_B_139456314414   
SAGE_Brain_ependymoma_B_R1023122690914   
SAGE_Brain_fetal_normal_B_S13055462214   
SAGE_Embryonic_stem_cell_H1_normal_p31_CL_SHE172762032014   
SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE112092321514   
SAGE_GallBladder_Adenocarcinoma_B_C0181380614   
SAGE_Bladder_Cancer_B_hs0241333580122513   
SAGE_Brain_ependymoma_B_R51275379513   
SAGE_Brain_glioblastoma_B_H833100600713   
SAGE_Brain_glioblastoma_hypoxia_CL_H24771765513   
SAGE_Breast_carcinoma_B_DCIS-543098313   
SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES11517351013   
SAGE_Esophagus_Normal_B_CN0175634513   
SAGE_Brain_Medulloblastoma_CL_UW228-N94937612   
SAGE_Breast_carcinoma_CL_ZR75_1_untreated32303212   
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP78785512   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia79015512   
SAGE_Ovary_normal_CL_IOSE29EC-1147159312   
SAGE_Pancreas_carcinoma_CL_ASPC31224212   
SAGE_Pancreas_normal_CS_H12632223212   
SAGE_Skin_Normal_B_hs0272439755026712   
SAGE_Brain_astrocytoma_grade_III_B_407108312611   
SAGE_Brain_astrocytoma_grade_II_B_H530102439611   
SAGE_Brain_astrocytoma_grade_II_B_H56388568511   
SAGE_Brain_glioblastoma_B_H1353124805711   
SAGE_Breast_carcinoma_B_95-34767070411   
SAGE_Breast_carcinoma_B_IDC-368891411   
SAGE_White_Blood_Cells_lung_macrophage_normal_AP_L151872311   
SAGE_Breast_Carcinoma_CD24+_C3_IDC38411741022510   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS672857410   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC2639361210   
SAGE_Embryonic_stem_cell_BG01_normal_p20_CL_SHE192016681110   
SAGE_Embryonic_stem_cell_H14_normal_p22_CL_SHE142121701110   
SAGE_GallBladder_Adenocarcinoma_B_NAM0178548410   
SAGE_Pancreas_adenocarcinoma_CL_CAPAN137674210   
SAGE_Skin_Melanoma_B_hs0276563180029710   
SAGE_Brain_Medulloblastoma_CL_UW228-V28082749   
SAGE_Brain_astrocytoma_grade_III_B_43910782459   
SAGE_Brain_medulloblastoma_B_H3066045439   
SAGE_Brain_medulloblastoma_CL_H3414392029   
SAGE_Brain_normal_cerebellum_B_BB5424050029   
SAGE_Brain_normal_cortex_B_pool66245139   
SAGE_Breast_carcinoma_MD_DCIS4078329   
SAGE_Colon_adenocarcinoma_B_Tu984137129   
SAGE_Colon_adenocarcinoma_CL_SW8376114839   
SAGE_Lung_normal_B_18870849   
SAGE_Ovary_carcinoma_CL_A27802136919   
SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT6216039   
SAGE_Prostate_carcinoma_CL_PC3_AS24076829   
SAGE_Brain_medulloblastoma_B_97-05-P0156997138   
SAGE_Brain_normal_thalamus_B_12401518   
SAGE_Kidney_embryonic_CL_293+beta-catenin2351918   
SAGE_Prostate_adenocarcinoma_CL_LNCaP2234418   
SAGE_Skin_Cancer_B_hs027957032982538   
SAGE_Skin_Melanoma_B_hs027338817701708   
SAGE_Brain_astrocytoma_grade_III_B_H10205157327   
SAGE_Brain_glioblastoma_B_R33610232247   
SAGE_Brain_glioblastoma_B_pooled5642827   
SAGE_Brain_normal_cerebellum_B_15038527   
SAGE_Brain_normal_peds_cortex_B_H15717755437   
SAGE_Brain_oligodendroglioma_B_H9882786417   
SAGE_Breast_Normal_Epithelium_CD24+_N3_N4730360021157   
SAGE_Breast_carcinoma_epithelium_CD44+_AP_PE25234227   
SAGE_Breast_fibroadenoma_MD5568827   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGD010986247   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Anoxia7905337   
SAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Normal_Oxygen8039837   
SAGE_Peritoneum_normal_B_135352727   
SAGE_Vascular_endothelium_normal_liver_associated_AP_NLEC17775937   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P25029727   
SAGE_Brain_astrocytoma_grade_III_B_H2729605936   
SAGE_Brain_astrocytoma_grade_III_B_R14011873346   
SAGE_Brain_ependymoma_B_11506237326   
SAGE_Brain_medulloblastoma_CL_D2836631626   
SAGE_Breast_carcinoma_B_IDC-56045126   
SAGE_Breast_carcinoma_CL_MCF7control_0h5987726   
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS78918436   
SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC86652026   
SAGE_Breast_metastatic_carcinoma_B_LN26034326   
SAGE_Breast_phyllodes_tumor_fibroblasts_AP_0702025957526   
SAGE_Cartilage_chondrosarcoma_grade_2_B_UIGA09384636   
SAGE_Liver_normal_B_16630826   
SAGE_Muscle_Rhabdomyosarcoma_B_16127026   
SAGE_Pancreas_normal_CS_HX3198516   
SAGE_Peritoneum_mesothelioma_B_123252916   
SAGE_Prostate_adenocarcinoma_MD_PR3176495126   
SAGE_Prostate_carcinoma_B_pool26603426   
SAGE_Prostate_carcinoma_CL_A+3029816   
SAGE_Prostate_normal_B_26405826   
SAGE_Skin_Normal_B_hs028244116361386   
SAGE_Brain_astrocytoma_grade_I_B_H10437592225   
SAGE_Brain_glioblastoma_B_R2010105335   
SAGE_Brain_medulloblastoma_B_H8766740425   
SAGE_Breast_carcinoma_MD_LCIS6783425   
SAGE_Breast_carcinoma_epithelium_BerEP4+AP_IDC77341025   
SAGE_Colon_carcinoma_CL_Hct116_p53_knockout_Normal_Oxygen7928425   
SAGE_GallBladder_Adenocarcinoma_B_HAIIb6698825   
SAGE_Prostate_carcinoma_CL_PC3_Mock3881915   
SAGE_Prostate_normal_epithelium_CS_confluent7189725   
SAGE_Skin_Cancer_B_hs028438925071035   
SAGE_Skin_Melanoma_B_hs027438952111105   
SAGE_Skin_Melanoma_B_hs027541282211145   
SAGE_White_Blood_Cells_breast_carcinoma_associated_CD45+_AP_IDC73439915   
SAGE_Bladder_Cancer_B_hs024062164261514   
SAGE_Bladder_Cancer_B_hs02654640198974   
SAGE_Brain_Medulloblastoma_CL_425Otx2siRNA9729124   
SAGE_Brain_medulloblastoma_B_98-05-P6084845114   
SAGE_Brain_medulloblastoma_B_98-13-P3014534214   
SAGE_Breast_Carcinoma_CD24+_C2_IDC3447209601054   
SAGE_Breast_Normal_Epithelium_CD44+_N5_N471890938474   
SAGE_Eye_Retinoblastoma_B_hs0389124342322734   
SAGE_Kidney_embryonic_CL_293-control4195514   
SAGE_Liver_cholangiocarcinoma_B_K2D4685314   
SAGE_Lung_adenocarcinoma_MD_L108688724   
SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM09896224   
SAGE_Prostate_carcinoma_CL_LNCaP-T4354214   
SAGE_Retinal_Pigment_Epithelium_normal_B_4PeriRPE9019924   
SAGE_Skin_Cancer_B_hs02833692239904   
SAGE_Stomach_adenocarcinoma_MD_G3294680214   
SAGE_Bone_Marrow_Cancer_FS_hs04054900037923   
SAGE_Brain_glioblastoma_CL_H3925599013   
SAGE_Brain_medulloblastoma_B_H13225949813   
SAGE_Brain_medulloblastoma_CL_4-HCR6659913   
SAGE_Breast_Normal_Epithelium_CD24+_N4_N481802274353   
SAGE_Breast_Normal_Epithelium_CD44+_N6_N481048765173   
SAGE_Breast_Normal_Epithelium_CD44+_N7_N58110078642003   
SAGE_Breast_carcinoma_B_IDC-46409513   
SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC76509113   
SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE25013213   
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC295408013   
SAGE_Colon_adenocarcinoma_B_Tu1025570013   
SAGE_Liver_cholangiocarcinoma_CL_K45297313   
SAGE_Ovary_cystadenoma_CL_ML10-105514413   
SAGE_Prostate_normal_MD_PR3175927713   
SAGE_Retina_Macula_normal_B_4Mac10141723   
SAGE_Skin_Normal_B_hs027158076861073   
SAGE_Stomach_carcinoma_B_xenograph_X435162013   
SAGE_Uterus_Normal_B_hs019464526231053   
SAGE_Vascular_normal_CS_VEGF+5731613   
SAGE_White_Blood_Cells_plaque_macrophage_normal_AP_P110287323   
SAGE_Brain_glioblastoma_B_R709909912   
SAGE_Brain_medulloblastoma_B_H9728537612   
SAGE_Brain_meningioma_grade_I_B_SF42716925312   
SAGE_Brain_normal_leptomeninges_B_AL27247312   
SAGE_Breast_normal_epithelium_CD44+_AP_N58046412   
SAGE_Breast_normal_epithelium_MUC1+_AP_N57622712   
SAGE_Breast_normal_myoepithelium_CD10+_AP_N57617312   
SAGE_Cartilage_dedifferentiated_chondrosarcoma_metastasis_CL_UIGX08843912   
SAGE_Eye_lens_B_UIHI08589812   
SAGE_Heart_normal_B_18306312   
SAGE_Lymph_Node_normal_B_19942612   
SAGE_Ovary_endometriosis_CL_E127609712   
SAGE_Pelvis_mixoid_chondrosarcoma_grade2_B_UIHT08357712   
SAGE_Prostate_normal_epithelium_CS_senescent7171712   
SAGE_Retina_Retinoblastoma_B_18849012   
SAGE_Skin_Normal_B_hs02816517089832   
SAGE_Urothelium_normal_B_hs02393114307432   
SAGE_Vascular_endothelium_hemangioma_B_1467568012   
SAGE_Vein_normal_B_hs02306755622852   
SAGE_Bone_Marrow_Normal_FS_hs04044842547371   
SAGE_Brain_astrocytoma_grade_III_B_R92710734411   
SAGE_Breast_Carcinoma_CD24+_C4_IDC403570910351   
SAGE_Breast_Carcinoma_EPCR+_C6_IDC314208755281   
SAGE_Breast_Carcinoma_SSEA4+_C7_IDC403381240231   
SAGE_Embryo_Pre-Cancer_B_hs03246893016431   
SAGE_Placenta_normal_B_111808311   
SAGE_Retina_Peripheral_normal_B_4Peri12669111   
SAGE_Retina_normal_B_4cRet10370111   
SAGE_Skin_Cancer_B_hs02803618498261   
SAGE_Skin_Normal_B_hs02775269789361   
SAGE_Vein_normal_B_hs02376135688531   
SAGE_White_Blood_Cells_monocytes_normal_AP_C110165611   
SAGE_Bladder_Cancer_B_hs02645833968290   
SAGE_Bladder_Cancer_B_hs02664244612130   
SAGE_Breast_Carcinoma_CD24+_C1_IDC314286604180   
SAGE_Breast_Carcinoma_EPCR+_C5_IDC27379656810   
SAGE_Breast_Normal_Epithelium_CD24+_N1_N339646880460   
SAGE_Breast_Normal_Epithelium_CD24+_N2_N3513584223300   
SAGE_Foreskin_normal_B_hs0305394035090   
SAGE_Lymph_node_Lymphoma_B_hs01964791481110   
SAGE_Lymph_node_Lymphoma_B_hs02045178993240   
SAGE_Peripheral_Blood_Cancer_B_hs0429575684890   
SAGE_Skin_Normal_B_hs02783042221120   
SAGE_Uterus_normal_B_hs0195371846320