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National Cancer Institute U.S. National Institutes of Health National Cancer Institute
RNAi
  • shRNA Info

Table 2: Gene list with corresponding clone ID# and percent remaining gene expression

Gene Oligo ID OCVAR-8 MCF-7
Percent Replicates Percent Replicates
ABL1 V2LHS_198745 14% 2 65% 2
V2LHS_196508 40% 2 126% 2
V2LHS_196809 115% 2 88% 1
ABL2 V2LHS_201802 10% 2 113% 1
V2LHS_49239 21% 1 34% 2
V2LHS_203486 24% 2 104% 2
AKT1 V2LHS_287019 15% 4 49% 2
V2LHS_188525 21% 4 67% 4
V2LHS_192049 45% 2 147% 4
AKT3 V2LHS_68871 11% 4 ND 0
V2LHS_68869 19% 4 147% 2
V2LHS_68872 102% 4 114% 2
ANXA8 V2LHS_132531 9% 2 16% 2
V2LHS_132529 18% 2 48% 1
V2LHS_287020 38% 2 27% 2
APAF1 V2LHS_94539 10% 2 50% 2
V2LHS_94542 23% 2 134% 3
V2LHS_94543 45% 2 113% 2
ATM V2LHS_192880 20% 2 74% 1
V2LHS_89368 42% 2 100% 2
V2LHS_89366 47% 2 ND 0
ATR V2LHS_94659 24% 4 86% 4
V2LHS_94661 29% 2 44% 2
V2LHS_287021 116% 4 87% 6
AXL V2LHS_202535 14% 2 ND 0
V2LHS_132889 77% 2 ND 0
V2LHS_201787 91% 2 ND 0
BCL2 V2LHS_111810 31% 2 38% 2
V2LHS_111806 40% 2 89% 3
V2LHS_111811 79% 1 113% 2
BCL2L1 V2LHS_202373 27% 2 54% 1
V2LHS_287022 31% 2 71% 1
V2LHS_269487 33% 2 62% 2
BCL3 V2LHS_48622 26% 4 50% 2
V2LHS_48623 29% 4 66% 4
V2LHS_48625 69% 4 89% 4
BCL9 V2LHS_287023 21% 4 41% 2
V2LHS_15242 37% 4 82% 4
V2LHS_287024 40% 2 111% 4
BLK V2LHS_150029 ND 0 ND 0
V2LHS_262371 ND 0 ND 0
V2LHS_150031 ND 0 ND 0
BRCA1 V2LHS_90880 26% 2 47% 2
V2LHS_90876 36% 2 71% 2
V2LHS_90877 39% 2 69% 2
BUB1 V2LHS_15109 9% 2 58% 2
V2LHS_15112 11% 2 34% 2
V2LHS_15111 26% 2 79% 2
BUB1B V2LHS_112634 45% 2 12% 2
V2LHS_112635 75% 4 15% 4
V2LHS_112633 78% 4 101% 4
CAPZB V2LHS_62217 6% 2 21% 2
V2LHS_280836 10% 2 28% 2
V2LHS_287028 20% 2 81% 2
CCNA2 V2LHS_112771 22% 2 86% 2
V2LHS_112774 23% 2 43% 2
V2LHS_112775 26% 1 133% 1
CCNE1 V2LHS_112781 20% 4 38% 4
V2LHS_112782 37% 4 78% 4
V2LHS_112780 41% 4 45% 2
CCNE2 V2LHS_202834 17% 1 39% 2
V2LHS_202479 20% 1 34% 2
V2LHS_203157 62% 1 45% 2
CDC2 V2LHS_150417 21% 2 41% 2
V2LHS_150421 28% 2 59% 2
V2LHS_150418 40% 2 46% 2
CDH1 V2LHS_14837 33% 2 82% 2
V2LHS_243170 52% 2 31% 2
V2LHS_14838 71% 2 17% 2
CDK2 V2LHS_150476 12% 2 18% 2
V2LHS_150479 21% 2 11% 2
V2LHS_150477 24% 2 54% 2
CDKN1A V2LHS_202469 31% 2 61% 2
V2LHS_203118 38% 2 64% 2
V2LHS_268120 44% 2 70% 2
CDKN1C V2LHS_88832 10% 1 70% 2
V2LHS_257806 17% 1 26% 2
V2LHS_88831 ND 0 39% 2
CDKN2A V2LHS_200168 51% 2 ND 0
V2LHS_200698 81% 2 ND 0
V2LHS_195839 125% 2 ND 0
CDKN2B V2LHS_262142 18% 2 26% 2
V2LHS_202466 23% 2 31% 2
V2LHS_201553 81% 2 83% 2
CDKN2C V2LHS_262296 10% 4 18% 2
V2LHS_262058 37% 2 78% 2
V2LHS_202787 75% 4 124% 2
COL4A6 V2LHS_150724 31% 4 102% 4
V2LHS_150727 37% 2 30% 2
V2LHS_150723 127% 4 202% 4
CSK V2LHS_287029 15% 2 40% 2
V2LHS_24205 18% 2 38% 2
V2LHS_24207 19% 2 26% 2
CSNK1E V2LHS_150981 16% 4 38% 4
V2LHS_150981 38% 4 62% 4
V2LHS_192204 83% 4 105% 4
CTGF V2LHS_151005 46% 4 101% 6
V2LHS_151004 80% 4 118% 6
V2LHS_151007 72% 4 156% 6
CTNNB1 V2LHS_151023 8% 2 16% 2
V2LHS_151022 31% 2 58% 2
V2LHS_151027 77% 2 69% 2
CXCR4 V2LHS_172392 33% 4 332% 3
V2LHS_172391 23% 2 68% 3
V2LHS_172388 84% 4 75% 3
DAPK1 V2LHS_62089 12% 4 22% 2
V2LHS_62084 24% 4 32% 2
V2LHS_62085 42% 4 125% 2
DDR1 V2LHS_202770 10% 4 28% 4
V2LHS_262746 18% 4 21% 4
V2LHS_263364 42% 2 65% 4
DDR2 V2LHS_63697 15% 4 25% 4
V2LHS_63700 15% 4 22% 4
V2LHS_63695 41% 4 20% 2
DEK V2LHS_172419 4% 2 8% 2
V2LHS_172420 14% 2 7% 2
V2LHS_172423 102% 2 72% 2
DNMT3B V2LHS_77234 48% 2 70% 4
V2LHS_77230 71% 4 67% 4
V2LHS_77233 48% 2 67% 4
DYRK2 V2LHS_32605 34% 1 63% 2
V2LHS_32603 36% 1 91% 4
V2LHS_32604 38% 1 96% 3
E2F1 V2LHS_43497 20% 2 14% 2
V2LHS_43498 30% 4 39% 3
V2LHS_287030 63% 2 59% 2
EDG2 V2LHS_239027 21% 2 ND 0
V2LHS_239021 26% 2 ND 0
V2LHS_201631 72% 2 ND 0
EED V2LHS_23171 48% 2 48% 2
V2LHS_23172 82% 3 93% 4
V2LHS_23174 123% 4 93% 4
EPHA2 V2LHS_17961 14% 2 7% 3
V2LHS_17959 31% 4 77% 3
EPHA4 V2LHS_17861 52% 1 132% 3
V2LHS_17864 ND 0 118% 2
V2LHS_101745 ND 0 76% 2
EPHB3 V2LHS_17765 75% 4 85% 4
V2LHS_17766 75% 3 65% 2
V2LHS_17694 80% 2 98% 2
EPHB4 V2LHS_17706 17% 2 84% 2
V2LHS_17702 84% 4 80% 2
V2LHS_17701 100% 2 99% 2
ERBB2 V2LHS_17669 97% 4 73% 4
V2LHS_17671 108% 4 21% 2
V2LHS_17672 124% 4 40% 2
ERBB4 V2LHS_43330 ND 0 83% 2
V2LHS_43326 ND 0 43% 2
V2LHS_43327 ND 0 348% 2
ETS1 V2LHS_244839 38% 2 ND 0
V2LHS_262605 94% 2 ND 0
V2LHS_43294 110% 2 ND 0
EZH2 V2LHS_17508 ND 0 52% 2
V2LHS_63066 ND 0 27% 2
V2LHS_238994 ND 0 32% 2
FADD V2LHS_16972 11% 1 61% 2
V2LHS_16975 14% 1 21% 2
V2LHS_16973 ND 0 45% 2
FER V2LHS_43109 9% 3 28% 4
V2LHS_43108 24% 4 38% 2
V2LHS_43110 12% 2 38% 2
FES V2LHS_113826 19% 2 26% 3
V2LHS_113824 27% 4 47% 2
V2LHS_113821 35% 3 28% 4
FGFR1 V2LHS_194182 91% 2 84% 2
V2LHS_193464 108% 2 98% 2
V2LHS_191146 110% 2 99% 2
FGFR2 V2LHS_201766 ND 0 54% 2
V2LHS_262926 ND 0 35% 2
V2LHS_230244 ND 0 50% 2
FLT1 V2LHS_287031 68% 2 75% 2
V2LHS_113897 155% 2 103% 2
V2LHS_113893 ND 0 39% 2
FLT3 V2LHS_173078 28% 4 ND 0
V2LHS_261831 34% 3 55% 4
V2LHS_173081 44% 2 92% 4
FOS V2LHS_245907 ND 0 98% 6
V2LHS_42860 ND 0 61% 2
V2LHS_42928 ND 0 62% 2
FRAT1 V2LHS_68502 48% 2 70% 4
V2LHS_68573 63% 4 64% 3
V2LHS_68575 ND 0 97% 2
FYN V2LHS_113997 11% 2 14% 2
V2LHS_113995 16% 2 29% 2
V2LHS_113996 45% 2 86% 2
FZD1 V2LHS_172585 27% 4 61% 4
V2LHS_172584 32% 4 62% 4
V2LHS_218523 36% 2 71% 4
H2AFZ V2LHS_132985 2% 4 13% 2
V2LHS_132984 1% 3 27% 2
V2LHS_132986 26% 4 115% 4
HOXA10 V2LHS_244712 ND 0 ND 0
V2LHS_51880 ND 0 ND 0
V2LHS_192251 ND 0 ND 0
HOXA9 V2LHS_133130 53% 2 ND 0
V2LHS_133131 94% 2 ND 0
V2LHS_61850 147% 2 ND 0
ID4 V2LHS_271687 85% 3 27% 2
V2LHS_132246 97% 3 36% 2
V2LHS_235854 95% 3 42% 2
IGF1R V2LHS_131069 ND 0 20% 2
V2LHS_131072 ND 0 45% 4
V2LHS_131070 ND 0 43% 2
ILK V2LHS_202751 6% 2 81% 2
V2LHS_202919 6% 2 36% 2
V2LHS_202417 58% 2 113% 2
INSR V2LHS_77246 35% 2 37% 4
V2LHS_77247 68% 3 89% 4
V2LHS_258435 107% 4 32% 2
ITK V2LHS_63242 ND 0 ND 0
V2LHS_63243 ND 0 ND 0
V2LHS_63244 ND 0 ND 0
JAK1 V2LHS_133563 ND 0 10% 2
V2LHS_133562 ND 0 14% 2
V2LHS_133559 ND 0 18% 2
JAK2 V2LHS_61648 42% 2 57% 3
V2LHS_61649 33% 2 35% 2
V2LHS_61652 117% 4 120% 4
KIT V2LHS_76973 ND 0 166% 2
V2LHS_76969 ND 0 ND 0
V2LHS_76974 ND 0 ND 0
LCK V2LHS_37233 75% 2 ND 0
V2LHS_37234 76% 2 ND 0
V2LHS_37232 ND 0 ND 0
LYN V2LHS_134145 ND 0 65% 4
V2LHS_134144 ND 0 13% 2
V2LHS_262582 ND 0 10% 2
MAPK1 V2LHS_202979 15% 4 17% 2
V2LHS_222351 32% 4 192% 4
V2LHS_217986 40% 3 47% 2
MAPK11 V2LHS_170506 17% 4 62% 4
V2LHS_170508 43% 2 94% 4
V2LHS_170505 60% 4 91% 4
MAPK8 V2LHS_217930 35% 4 69% 4
V2LHS_170502 40% 4 42% 2
V2LHS_223560 42% 4 57% 4
MAPK9 V2LHS_170515 ND 0 68% 2
V2LHS_262416 ND 0 24% 2
V2LHS_170514 ND 0 24% 2
MAPKAPK2 V2LHS_36045 23% 4 27% 4
V2LHS_202459 30% 4 52% 4
V2LHS_263378 117% 2 92% 2
MAX V2LHS_24949 4% 2 13% 4
V2LHS_287035 9% 2 16% 4
V2LHS_24953 ND 0 43% 2
MDM2 V2LHS_254553 7% 4 46% 4
V2LHS_254556 20% 4 74% 6
V2LHS_151657 60% 4 105% 6
MET V2LHS_76544 14% 3 16% 4
V2LHS_76542 18% 3 28% 4
V2LHS_76541 36% 4 71% 4
MLH1 V2LHS_76498 7% 2 27% 3
V2LHS_261056 13% 1 21% 2
V2LHS_76497 17% 2 30% 2
MMP11 V2LHS_215811 16% 2 16% 4
V2LHS_200010 27% 3 23% 4
V2LHS_12456 45% 3 20% 3
MSH2 V2LHS_76354 3% 1 21% 2
V2LHS_76350 4% 2 20% 2
V2LHS_76353 9% 2 31% 2
MTCP1 V2LHS_215575 106% 4 39% 2
V2LHS_211774 86% 4 66% 4
V2LHS_213953 89% 4 45% 3
NCOA3 V2LHS_207128 18% 4 37% 4
V2LHS_261936 21% 4 33% 4
V2LHS_200609 36% 4 38% 2
NR4A3 V2LHS_203384 19% 1 114% 4
V2LHS_203095 33% 2 88% 4
V2LHS_239115 52% 2 126% 3
NRAS V2LHS_152359 100% 2 133% 6
V2LHS_152358 ND 0 40% 2
V2LHS_152356 ND 0 67% 2
PAK1 V2LHS_152618 ND 0 ND 0
V2LHS_152621 ND 0 ND 0
V2LHS_152622 ND 0 ND 0
PAK4 V2LHS_197812 9% 4 17% 4
PBX3 V2LHS_249334 30% 4 34% 2
V2LHS_248142 37% 4 35% 2
V2LHS_63403 37% 4 44% 2
PCNA V2LHS_152710 10% 1 52% 2
V2LHS_152712 44% 2 92% 2
V2LHS_261970 109% 2 77% 2
PCTK3 V2LHS_130503 14% 2 50% 3
V2LHS_130498 20% 1 34% 2
V2LHS_130499 34% 1 116% 4
PDK1 V2LHS_223262 16% 2 43% 1
V2LHS_262288 21% 2 48% 1
V2LHS_169809 28% 2 97% 1
PIK3CA V2LHS_58549 10% 2 99% 2
V2LHS_58550 14% 4 44% 2
V2LHS_58584 94% 2 139% 2
PMS2 V2LHS_232932 15% 4 37% 4
V2LHS_93549 25% 4 90% 5
V2LHS_93544 81% 4 155% 4
PRDM2 V2LHS_20207 33% 4 44% 2
V2LHS_241827 44% 4 81% 4
V2LHS_287036 53% 4 109% 4
PRKACB V2LHS_170403 13% 2 ND 0
V2LHS_220512 21% 2 125% 1
V2LHS_222043 33% 2 92% 2
PRKAR2B V2LHS_170430 4% 2 ND 0
V2LHS_221377 9% 2 68% 2
V2LHS_170431 10% 2 113% 2
PTEN V2LHS_92317 7% 2 ND 0
V2LHS_231772 8% 2 72% 2
V2LHS_92319 12% 2 66% 2
PTK2 V2LHS_57326 7% 2 60% 2
V2LHS_57330 14% 3 97% 3
V2LHS_248542 15% 2 34% 2
PTK2B V2LHS_172999 25% 4 35% 2
V2LHS_2156 29% 4 14% 2
V2LHS_173002 42% 2 100% 4
PTTG1 V2LHS_242543 9% 2 68% 2
V2LHS_28556 16% 3 69% 3
V2LHS_28552 74% 2 89% 2
RAC1 V2LHS_94788 28% 2 37% 2
V2LHS_261830 29% 2 66% 2
V2LHS_203203 40% 2 76% 2
RAF1 V2LHS_171214 13% 4 38% 3
V2LHS_171213 9% 4 28% 2
V2LHS_171212 10% 3 69% 3
RB1 V2LHS_130611 21% 2 122% 4
V2LHS_130606 18% 2 116% 2
V2LHS_130607 48% 3 156% 3
RBL1 V2LHS_35223 267% 1 ND 0
V2LHS_171291 ND 0 ND 0
V2LHS_35220 64% 1 ND 0
RBL2 V2LHS_57099 43% 4 54% 4
V2LHS_57102 39% 2 78% 4
V2LHS_57100 45% 2 66% 4
RRM1 V2LHS_93885 80% 4 23% 2
V2LHS_93881 89% 4 65% 4
V2LHS_93884 98% 4 36% 2
RRM2 V2LHS_231025 41% 4 20% 2
V2LHS_93887 50% 3 55% 3
V2LHS_93889 93% 4 83% 4
SCRIB V2LHS_162 17% 2 29% 4
V2LHS_256522 47% 2 65% 1
V2LHS_74302 59% 4 87% 3
SOCS1 V2LHS_23984 32% 4 77% 4
V2LHS_23987 43% 4 102% 4
V2LHS_287037 71% 2 115% 2
STK3 V2LHS_56745 140% 1 ND 0
V2LHS_56747 150% 1 ND 0
V2LHS_56748 ND 0 ND 0
STK6 V2LHS_153607 7% 4 41% 4
V2LHS_203027 11% 2 46% 4
V2LHS_12364 38% 2 82% 6
SYK V2LHS_153702 ND 0 68% 4
V2LHS_153703 ND 0 51% 3
V2LHS_153701 ND 0 118% 3
TACC1 V2LHS_56716 101% 4 119% 4
V2LHS_56714 25% 4 45% 2
V2LHS_56713 22% 4 35% 2
TEC V2LHS_153876 38% 4 47% 2
V2LHS_153878 41% 2 77% 4
V2LHS_153874 72% 4 39% 2
TEK V2LHS_93160 ND 0 ND 0
V2LHS_232742 ND 0 ND 0
V2LHS_232742 ND 0 ND 0
TFAP2C V2LHS_153917 22% 2 96% 2
V2LHS_153918 24% 1 73% 2
V2LHS_153920 ND 0 79% 2
TFE3 V2LHS_197759 9% 4 42% 2
V2LHS_204977 37% 4 117% 4
V2LHS_287038 39% 2 84% 4
TGFB2 V2LHS_153975 16% 4 28% 4
V2LHS_153972 21% 4 86% 4
V2LHS_153971 37% 2 111% 4
TNFRSF12A V2LHS_135377 15% 4 21% 4
V2LHS_135381 19% 2 32% 2
V2LHS_135378 63% 3 88% 4
TP53 V2LHS_93615 7% 4 29% 4
V2LHS_93613 18% 4 57% 4
V2LHS_287039 25% 4 74% 4
TXK V2LHS_171688 ND 0 ND 0
V2LHS_171691 ND 0 ND 0
V2LHS_171689 ND 0 ND 0
TYRO3 V2LHS_56438 12% 4 31% 2
V2LHS_56442 13% 4 46% 4
V2LHS_56439 37% 4 63% 4
VAV1 V2LHS_69844 7% 2 211% 1
V2LHS_69842 10% 2 ND 0
V2LHS_69841 11% 2 ND 0
WNT10B V2LHS_172033 12% 4 8% 2
V2LHS_218395 31% 4 46% 2
V2LHS_287040 64% 4 118% 4
WNT5A V2LHS_172021 23% 2 69% 2
V2LHS_172018 33% 2 88% 2
V2LHS_172016 ND 0 101% 1
ZNF217 V2LHS_12516 21% 4 76% 4
V2LHS_199670 37% 4 97% 4
V2LHS_196547 40% 2 99% 4