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CGAP References

  1. Grouse LH, Munson PJ, Nelson PS. Sequence databases and microarrays as tools for identifying prostate cancer biomarkers. Urology 2001, 57 (4 Suppl 1), 154-9.

  2. Ryu B, Jones J, Hollingsworth MA, Hruban RH, Kern SE. Invasion-specific genes in malignancy: serial analysis of gene expression comparisons of primary and passaged cancers. Cancer Research, 2001, 61, 1833-8.

  3. Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ. Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature, 2001, 409: 953-958.

  4. Buetow KH, Edmonson M, MacDonald R, Clifford R, Yip P, Kelley J, Little DP, Strausberg R, Koester H, Cantor CR, Braun A. High-throughput development and characterization of a genome-wide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time of flight mass spectrometry. Proc Natl Acad Sci, 2001, USA, 98, 581-584.

  5. Emmert-Buck MR, Strausberg RL, Krizman DB, Fatima Bonaldo M, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, Hillier LW, Katz KS, Klausner RD, Kuznetzov V, Lash AE, Lennon G, Linehan WM, Liotta LA, Marra MA, Munson PJ, Ornstein DK, Prabhu VV, Prange C, Schuler GD, Soares MB, Tolstoshev CM, Vocke CD, Waterston RH. Molecular profiling of clinical tissue specimens. Journal of Molecular Diagnostics, 2000, 2, 60-66.

  6. Loging WT, Lal A, Siu IM, Loney TL, Wikstrand, CJ, Marra MA, Prange C, Bigner DD, Strausberg RL, Riggins GJ. Identifying potential tumor markers and antigens by database mining and rapid expression screening. Genome Research, 2000, 10, 1393-1402.

  7. Lash AE, Tolstoshev CM, Wagner L, Schuler GD, Strausberg RL, Riggins GJ, Altschul SF. SAGEmap: A public gene expression resource. Genome Research, 2000, 10: 1051-1060.

  8. Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, Hillier LW, Katz KS, Klausner RD, Kuznetzov V, Lash AE, Lennon G, Linehan WM, Liotta LA, Marra MA, Munson PJ, Ornstein DK, Prabhu VV, Prange C, Schuler GD, Soares MB, Tolstoshev CM, Vocke CD, Waterston RH. Molecular profiling of clinical tissue specimens: feasibility and applications. Am J Pathol, 2000, 156: 1109-1115.

  9. Strausberg RL, Buetow KH, Emmert-Buck M, Klausner R. The Cancer Genome Anatomy Project: building an annotated gene index. Trends in Genetics, 2000, 16, 103-106.

  10. Kirsch IR, Green ED, Yonescu R, Strausberg RL, Carter N, Braden VV, Hilgenfeld E, Schuler G, Lash AE, Shen GL, Martelli M, Kuehl WM, Klausner RD, Ried T. A Systematic, high-resolution linkage of the cytogenetic and physical maps of the human genome. Nat Genet, 2000, 24:339-340.

  11. Shillitoe EJ, May M, Patel V, Lethanakul C, Ensley JF, Strausberg RL, Gutkind JS. Genome-wide analysis of oral cancer - early results from the Cancer Genome Anatomy Project. Oral Oncology, 2000, 36, 8-16.

  12. Lal A, Lash AE, Altschul SF, Velculescu V, Zhang L, McLendon RE, Marra MA, Prange C, Morin PJ, Polyak K, Papadopoulos N, Vogelstein B, Kinzler KW, Strausberg RL, Riggins GJ. A public database for gene expression in human cancers. Cancer Research, 1999, 59: 5403-5407.

  13. Strausberg RL, Austin MJ. Functional genomics: technological challenges and opportunities. Physiol. Genomics, 1999, 1: 25-32.

  14. Krizman DB, Wagner L, Lash A, Strausberg RL, Emmert-Buck MR. The Cancer Genome Anatomy Project: EST sequencing and the genetics of cancer progression. Neoplasia, 1999, 1(2): 101-106.

  15. Strausberg RL. The Cancer Genome Anatomy Project: building a new information and technology platform for cancer research. In: Molecular Pathology of Early Cancer, 1999, (Srivastava, S., Henson, D.E., Gazdar, A., eds.IOS Press), pp. 365-370.

  16. Cole KA, Krizman DB, Emmert-Buck MR. The genetics of cancer - a 3D model. Nat Genet, 1999, Jan;21(1 Suppl):38-41.

  17. Luo L, Salunga RC, Guo H, Bittner A, Joy KC, Galindo JE, Xiao H, Rogers KE, Wan JS, Jackson MR, Erlander MG. Gene expression profiles of laser-captured adjacent neuronal subtypes. Nat Med, 1999, Jan;5(1):117-22.

  18. Fend F, Emmert-Buck MR, Chuaqui R, Cole K, Lee J, Liotta LA, Raffeld M. Immuno-LCM: laser capture microdissection of immunostained frozen sections for mRNA analysis. Am J Pathol, 1999, Jan;154(1):61-6.

  19. Suarez-Quian CA, Goldstein SR, Pohida T, Smith PD, Peterson JI, Wellner E, Ghany M, Bonner RF. Laser capture microdissection of single cells from complex tissues. Biotechniques, 1999, Feb;26(2):328-35.

  20. Gilles PN, Wu DW, Foster CB, Dillon PJ, Chanock SJ. Single nucleotide polymorphic discrimination by an electronic dot blot assay. Nat Biotech, 1999, April;17(4):365-370.

  21. Peterson LA, Brown MR, Carlisle AJ, Kohn EC, Liotta LA, Emmert-Buck MR, Krizman DB. An improved method for construction of directionally cloned cDNA libraries from microdissected cells. Cancer Res, 1998, Dec 1;58(23):5326-8.

  22. Pappalardo PA, Bonner R, Krizman DB, Emmert-Buck MR, Liotta LA. Microdissection, microchip arrays, and molecular analysis of tumor cells (primary and metastases). Semin Radiat Oncol, 1998, Jul;8(3):217-23.

  23. Simone NL, Bonner RF, Gillespie JW, Emmert-Buck MR, Liotta LA. Laser-capture microdissection: Opening the microscopic frontier to molecular analysis. Trends Genet, 1998, Jul;14(7):272-6.

  24. Bonner RF, Emmert-Buck M, Cole K, Pohida T, Chuaqui R, Goldstein S, Liotta LA. Laser capture microdissection: Molecular analysis of tissue. Science, 1997, Nov 21;278(5342):1481,1483.

  25. Strausberg RL, Dahl CA, Klausner RD: New opportunities for uncovering the molecular basis of cancer. Nat Genet, 1997, Apr;15 Spec No:415-6.

  26. Krizman DB, Chuaqui RF, Meltzer PS, Trent JM, Duray PH, Linehan WM, Liotta LA, Emmert-Buck MR. Construction of a representative cDNA library from prostatic intraepithelial neoplasia. Cancer Res, 1996, Dec 1;56(23):5380-3.

  27. Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA. Laser capture microdissection. Science, 1996, Nov 8;274(5289):998-100.