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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Idh1, isocitrate dehydrogenase 1 (NADP+), soluble
Sequence ID:NM_001111320
NM_010497
Entrez Gene ID:15926
Ensembl ID:ENSMUSG00000025950

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C2|1 29.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 65159273 - 65175369

 Exon Info From UCSC:
NM_001111320
NM_010497

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6808731Full LengthBC088986isocitrate dehydrogenase 1 (NADP+), soluble

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034627  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001111320 NP_001104790      
NM_010497 NP_034627 O88844
Q5HZJ8
EC 1.1.1.42 Iso_dh

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF020039 AAD02919 O88844 EC 1.1.1.42
BC088986 AAH88986 Q5HZJ8  
DQ403075 ABD77208 Q0QER9  
AK087063 BAC39792 Q8C338  
AK149019 BAE28720 O88844 EC 1.1.1.42
AK151212 BAE30207 O88844 EC 1.1.1.42
AK159173 BAE34873 O88844 EC 1.1.1.42
AK160896 BAE36075 O88844 EC 1.1.1.42
AK167158 BAE39299 O88844 EC 1.1.1.42
AK167583 BAE39644 Q3TJ51  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Idh1 NP_001104790 R.norvegicus Idh1 24479   NP_113698 98
H.sapiens IDH1 3417 Gene Info NP_005887 96
C.elegans F59B8.2 177775   NP_501665 77
A.gambiae AgaP_AGAP006660 1277248   XP_001688948 76
D.melanogaster Idh 44291   NP_652044 73
A.thaliana cICDH 842905   NP_176768 68
S.cerevisiae IDP2 850871   NP_013275 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)