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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg12, autophagy related 12
Sequence ID:NM_026217
Entrez Gene ID:67526
Ensembl ID:ENSMUSG00000032905

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 C|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 46734438 - 46741551

NM_026217 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
120934689207046894162
209421564689490846894970
215722934689704846897184
229424924690103446901232

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30630196Full LengthBC070470autophagy-related 12 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080493  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026217 NP_080493 Q9CQY1 APG12

Related Sequences

 
mRNAGenPeptSwissProt
BC070470 AAH70470 Q9CQY1
AK005405 BAB24005 Q9CQY1
AK008698 BAB25839 Q9CQY1
AK016474 BAB30256 Q9CQY1
AB066216 BAB62092 Q9CQY1
AK167027 BAE39200 Q9CQY1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg12 NP_080493 H.sapiens ATG12 9140 Gene Info NP_004698 89
R.norvegicus Atg12 361321   NP_001033584 89
A.gambiae AgaP_AGAP007296 1269871   XP_308525 60
A.gambiae AgaP_AGAP012847 1268773   XP_307342 60
D.melanogaster Atg12 39383   NP_648551 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)