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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sdr16c5, short chain dehydrogenase/reductase family 16C, member 5
Sequence ID:NM_181989
Entrez Gene ID:242285
Ensembl ID:ENSMUSG00000028236

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 3995941 - 4016623

NM_181989 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
131439230883923401
31544039326433932768
44158539337273933871
58668539374543937553
68681739394713939602
818116439432383943584
1165137939465953946809

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40045268Full LengthBC104134short chain dehydrogenase/reductase family 16C, member 5
40045269Full LengthBC104135short chain dehydrogenase/reductase family 16C, member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_871789  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_181989 NP_871789 Q7TQA3 EC 1.1.1.105 adh_short

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC104134 AAI04135 Q7TQA3 EC 1.1.1.105
BC104135 AAI04136 Q7TQA3 EC 1.1.1.105
AY277588 AAP41074 Q7TQA3 EC 1.1.1.105
AK136508 BAE23016 Q7TQA3 EC 1.1.1.105

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sdr16c5 NP_871789 R.norvegicus Sdr16c5 297805   NP_001100104 91
H.sapiens SDR16C5 195814 Gene Info NP_620419 80
C.elegans dhs-3 172603   NP_001122508 51
C.elegans dhs-19 179578   NP_505915 51
A.gambiae AgaP_AGAP008125 1277830   XP_317334 45
D.melanogaster CG15629 33679   NP_608859 41
N.crassa NCU06845 3879468   XP_963319 36
A.thaliana HSD6 835149   NP_199890 32
S.cerevisiae YDL114W 851444   NP_010169 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)