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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit
Sequence ID:NM_001083616
NM_028981
Entrez Gene ID:12289
Ensembl ID:ENSMUSG00000015968

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14 8.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 30042066 - 30353009

 Exon Info From UCSC:
NM_001083616
NM_028981

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069537Full LengthBC172729calcium channel, voltage-dependent, L type, alpha 1D subunit
100069428BC172620calcium channel, voltage-dependent, L type, alpha 1D subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083257  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083616 NP_001077085    
NM_028981 NP_083257   Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
M57975 AAA63292 Q99246
BC058783 AAH58783 Q6PDD2
BC172620 AAI72620  
BC172729 AAI72729  
AK018426 BAB31205 Q9CRQ8
AB086123 BAC77259 Q99246
AJ437291 CAD26883 Q99246
AJ437292 CAD26884 Q99246

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cacna1d NP_001077085 R.norvegicus Cacna1d 29716   NP_058994 99
H.sapiens CACNA1D 776 Gene Info NP_000711 97
A.gambiae AgaP_AGAP012434 4578503   XP_001231059 67
D.melanogaster Ca-alpha1D 34950   NP_525104 66
C.elegans egl-19 177513   NP_001023079 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)