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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nr1h2, Nuclear receptor subfamily 1, group H, member 2
Sequence ID:NM_009473
Entrez Gene ID:22260
Ensembl ID:ENSMUSG00000060601

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 B4|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 44549640 - 44553946

NM_009473 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
25005180500251805500
5017095180566951805877
7108095180611451806213
8109895180668751806866
99012495180696951807228
125015405180732451807614
154116545180787651807989
165517155180806651808126
171618455180894851809077
184619645180917451809292

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6829527Full LengthBC066025nuclear receptor subfamily 1, group H, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033499  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009473 NP_033499 Q60644 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
U09419 AAC52164 Q60644
BC066025 AAH66025 Q60644
AK077620 BAC36906 Q8BP65
AK156777 BAE33850 Q8BP65

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nr1h2 NP_033499 R.norvegicus Nr1h2 58851   NP_113814 98
H.sapiens NR1H2 7376 Gene Info NP_009052 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)