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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lcn2, lipocalin 2
Sequence ID:NM_008491
Entrez Gene ID:16819
Ensembl ID:ENSMUSG00000026822

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2 27.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 32384663 - 32387770

NM_008491 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12483224015632240403
2493503224093832241039
3514703224122532241344
4715563224147532241560
5576933224254732242683
6948533224309932243258

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130346Full LengthBC132069lipocalin 2
40130348Full LengthBC132071lipocalin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032517  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008491 NP_032517 P11672 Lipocalin

Related Sequences

 
mRNAGenPeptSwissProt
BC132069 AAI32070 P11672
BC132071 AAI32072 P11672
AK149774 BAE29077 P11672
X14607 CAA32762 P11672

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lcn2 NP_032517 R.norvegicus Lcn2 170496   NP_570097 80
H.sapiens LCN2 3934 Gene Info NP_005555 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)