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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ctsl, cathepsin L
Sequence ID:NM_009984
Entrez Gene ID:13039
Ensembl ID:ENSMUSG00000021477

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B3|13 30.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 64363796 - 64370267

NM_009984 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19876446452164465507
98811056446651264466629
110612686446778664467948
126914936446817564468399
149416406446916764469313
164117636446942364469545
176419006447033564470471
190119716447154364471613

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30359160Full LengthBC068163cathepsin L

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034114  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009984 NP_034114 P06797
Q543M3
EC 3.4.22.15 Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
J02583 AAA37445 P06797
Q543M3
EC 3.4.22.15
AF121837 AAD32136 P06797 EC 3.4.22.15
AF121838 AAD32137 P06797 EC 3.4.22.15
AF121839 AAD32138 P06797 EC 3.4.22.15
BC068163 AAH68163 P06797
Q543M3
EC 3.4.22.15
AK002221 BAB21945 P06797
Q543M3
EC 3.4.22.15
AK011589 BAB27719 Q9D0C0  
AK049466 BAC33761 P06797
Q543M3
EC 3.4.22.15
AK136341 BAE22939 Q3UWH6  
AK145051 BAE26206 P06797
Q543M3
EC 3.4.22.15
AK147142 BAE27712 Q3UHZ4  
AK150452 BAE29572 P06797
Q543M3
EC 3.4.22.15
AK151169 BAE30172 P06797
Q543M3
EC 3.4.22.15
AK153076 BAE31701 P06797
Q543M3
EC 3.4.22.15
AK153417 BAE31977 Q3U5U9  
AK159511 BAE35143 P06797
Q543M3
EC 3.4.22.15
AK160100 BAE35627 Q3TVJ1  
AK161538 BAE36450 Q3TT75  
AK165397 BAE38161 Q3TNC8  
AK169394 BAE41141 P06797
Q543M3
EC 3.4.22.15
AK169712 BAE41323 P06797
Q543M3
EC 3.4.22.15
X04392 CAA27980 P06797 EC 3.4.22.15
X06086 CAA29470 P06797
Q543M3
EC 3.4.22.15
Y18465 CAA77183 Q6LAF5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsl NP_034114 R.norvegicus Ctsl1 25697   NP_037288 94
H.sapiens CTSL2 1515 Gene Info NP_001188504 76
A.gambiae AgaP_AGAP011828 5667926   XP_001689282 57
D.melanogaster Cp1 36546   NP_523735 55
C.elegans cpl-1 180111   NP_507199 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)