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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Arhgef40, Rho guanine nucleotide exchange factor (GEF) 40
Sequence ID:NM_001145921
NM_001145922
NM_198249
Entrez Gene ID:268739
Ensembl ID:ENSMUSG00000004562

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 C2|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 51984899 - 51990458

 Exon Info From UCSC:
NM_001145921
NM_001145922
NM_198249

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6848691Full LengthBC059018RIKEN cDNA E130112L23 gene
4910290IncompleteBC030925RIKEN cDNA E130112L23 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_937892  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145921 NP_001139393    
NM_001145922 NP_001139394    
NM_001253694 NP_001240623    
NM_001253695 NP_001240624    
NM_001253696 NP_001240625    
NM_027248 NP_081524 Q924S6 zf-C2H2
NM_198249 NP_937892 Q3UPH7 PH

Related Sequences

 
mRNAGenPeptSwissProt
BC010447 AAH10447 Q921W9
BC052050 AAH52050 Q80W02
BC058405 AAH58405 Q3UPH7
BC059018 AAH59018 Q3UPH7
BC071271 AAH71271 Q6IQX8
BC096486 AAH96486 Q4VA98
AK008516 BAB25714 Q9CVF3
AB063578 BAB61057 Q924S6
AK131136 BAD21386 Q3UPH7
AK134295 BAE22088 Q3UPH7
AK143527 BAE25418 Q3UPH7
AK147761 BAE28120 Q3UPH7
AK155659 BAE33372 Q3UPH7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arhgef40 NP_937892 R.norvegicus Arhgef40 361034   XP_341310 95
H.sapiens ARHGEF40 55701 Gene Info NP_060541 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)