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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Esr1, estrogen receptor 1 (alpha)
Sequence ID:NM_007956
Entrez Gene ID:13982
Ensembl ID:ENSMUSG00000019768

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 A1|10 12.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 4710157 - 5002025

NM_007956 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1257353427795345351
2574275753485275348710
2758289153772485377381
2892303054071905407328
3031336654893475489682
3367348355625675562683
3484367455997335599923
3675420956336935634227
4210431957343855734494

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068146Full LengthBC167246estrogen receptor 1 (alpha)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031982  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007956 NP_031982 P19785 Hormone_recep
zf-C4
Oest_recep

Related Sequences

 
mRNAGenPeptSwissProt
M38651 AAA37580 P19785
AF128220 AAF22561 P19785
AF128221 AAF22562 P19785
BC167246 AAI67246  
EU791538 ACF17956 B3VQI7
EU791540 ACF17958 B3VQI7
AK036627 BAC29510 P19785
AK041525 BAC30973 P19785
AK136228 BAE22884 Q3UWN0
AK139745 BAE24122 Q3UT58
AB560752 BAJ65337 E7FJU2
AB560753 BAJ65338 E7FJU3
AB560754 BAJ65339 Q3UT58
AB560755 BAJ65340 Q3UT58
AB560756 BAJ65341 E7FJU6
AB560757 BAJ65342 Q3UWN0
AB560758 BAJ65343 Q3UWN0
AB560759 BAJ65344 Q3UWN0
AB560760 BAJ65345 Q3UWN0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Esr1 NP_031982 R.norvegicus Esr1 24890   NP_036821 98
H.sapiens ESR1 2099 Gene Info NP_000116 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta