Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col25a1, collagen, type XXV, alpha 1
Sequence ID:NM_001244952
NM_029838
NM_198711
Entrez Gene ID:77018
Ensembl ID:ENSMUSG00000058897

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 H1

Chromosomal Position (from UCSC)

Chromosomal Position:3: 130181216 - 130595132

 Exon Info From UCSC:
NM_029838
NM_198711

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861070Full LengthBC138051collagen, type XXV, alpha 1
5038358IncompleteBC024329collagen, type XXV, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_942004  NP_084114  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244952 NP_001231881    
NM_029838 NP_084114 Q99MQ5 Collagen
NM_198711 NP_942004   Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC024329 AAH24329 A0PJC4
BC138051 AAI38052 B2RQR7
AF315290 AAK37475 Q99MQ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col25a1 NP_084114 H.sapiens COL25A1 84570 Gene Info NP_942014 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)