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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. T, brachyury
Sequence ID:NM_009309
Entrez Gene ID:20997
Ensembl ID:ENSMUSG00000062327

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A1|17 4.02 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 8434450 - 8441947

NM_009309 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
131486272878627600
31557986280558628319
58071486289758629109
71577686298428629903
77783886300148630075
839101286314808631653
1013114286327748632903
1143204686344578635360

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129730Full LengthBC120807brachyury

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033335  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009309 NP_033335 P20293
Q78ZW9
T-box

Related Sequences

 
mRNAGenPeptSwissProt
BC120807 AAI20808 Q78ZW9
X51683 CAA35985 P20293
Q78ZW9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus T NP_033335 R.norvegicus T 292301   NP_001099679 99
H.sapiens T 6862 Gene Info NP_003172 92
A.gambiae AgaP_AGAP011927 1280741   XP_320606 60
D.melanogaster byn 39349   NP_524031 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)