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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nepn, nephrocan
Sequence ID:NM_025684
Entrez Gene ID:66650
Ensembl ID:ENSMUSG00000038624

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 52391608 - 52404468

NM_025684 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12215211141352111633
22211235212016452121065
112418235212371052124409

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130323Full LengthBC132046nephrocan
40130325Full LengthBC132048nephrocan

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079960  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025684 NP_079960 Q9CQ76 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC132046 AAI32047 Q9CQ76
BC132048 AAI32049 Q9CQ76
AY938536 AAX23973 Q9CQ76
AK017656 BAB30857 Q9CQ76
AK017780 BAB30928 Q9CQ76
AK017842 BAC25530 Q8BMW1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nepn NP_079960 R.norvegicus Nepn 309775   NP_001101102 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)