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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc30a1, solute carrier family 30 (zinc transporter), member 1
Sequence ID:NM_009579
Entrez Gene ID:22782
Ensembl ID:ENSMUSG00000037434

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H6|1 106.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 191910217 - 191913235

NM_009579 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1833193730659193731491
8345230193732729193737125

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6333155Full LengthBC052166solute carrier family 30 (zinc transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033605  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009579 NP_033605 Q60738
Q3UM63
Cation_efflux

Related Sequences

 
mRNAGenPeptSwissProt
BC052166 AAH52166 Q60738
Q3UM63
AK145100 BAE26235 Q60738
Q3UM63

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc30a1 NP_033605 R.norvegicus Slc30a1 58976   NP_074044 97
H.sapiens SLC30A1 7779 Gene Info NP_067017 86
D.melanogaster ZnT63C 38407   NP_728857 50
A.gambiae AgaP_AGAP005918 1276586   XP_315949 46
S.cerevisiae COT1 854494   NP_014961 39
C.elegans cdf-1 180923   NP_509095 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)