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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Podxl, podocalyxin-like
Sequence ID:NM_013723
Entrez Gene ID:27205
Ensembl ID:ENSMUSG00000025608

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A3.3|6 10.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31522572 - 31563818

NM_013723 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
137273146949231473218
372838953147430431474471
389639573147466931474730
395841113147493831475091
411241833147620131476272
418443923147654631476754
439349713147845731479035
497253303151357831513936

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6406610Full LengthBC052442podocalyxin-like
6406610Full LengthBC054530podocalyxin-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038751  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013723 NP_038751 Q9R0M4
Q791G4
CD34_antigen

Related Sequences

 
mRNAGenPeptSwissProt
AF290209 AAG02458 Q9R0M4
Q791G4
BC052442 AAH52442 Q9R0M4
Q791G4
BC054530 AAH54530 Q9R0M4
Q791G4
AB028048 BAA86912 Q9R0M4
AK134723 BAE22258 Q3UYF4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Podxl NP_038751 R.norvegicus Podxl 192181   NP_620203 72
H.sapiens PODXL 5420 Gene Info NP_001018121 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)