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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tnfsf12, tumor necrosis factor (ligand) superfamily, member 12
Sequence ID:NM_011614
Entrez Gene ID:21944

Database Links

UniGeneEntrez GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B4|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69686347 - 69695754

NM_011614 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
317746949984969500592
7758996950075369500877
9009356950700769507042
9369896950712269507175
99010656950825169508326
106611136950889569508942
111415156950909769509498

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015971BC152795tumor necrosis factor (ligand) superfamily, member 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035744  NP_076006  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001034097 NP_001029269 Q8BXS2  
NM_001159503 NP_001152975    
NM_001159505 NP_001152977    
NM_011614 NP_035744 Q5F2A0
O54907
TNF
NM_023517 NP_076006 Q9D777 TNF

Related Sequences

 
mRNAGenPeptSwissProt
AF030100 AAC53517 Q5F2A0
O54907
BC069900 AAH69900 Q9D777
BC096441 AAH96441 Q5F2A1
BC152795 AAI52796  
AK009514 BAB26332 Q9D777
AK020909 BAB32249 O54907
AK040667 BAC30661 Q5F2A4
AK044387 BAC31897 Q8BXS2
AK134028 BAE21985 Q5F2A4
AK170297 BAE41696 Q5F2A0
O54907
AK170351 BAE41739 Q5F2A4
AK171014 BAE42185 Q3TBX2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnfsf12 NP_035744 R.norvegicus Tnfsf12 360548   NP_001001513 98
H.sapiens TNFSF12 8742   NP_003800 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta