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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd80, CD80 antigen
Sequence ID:NM_009855
Entrez Gene ID:12519
Ensembl ID:ENSMUSG00000075122

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B5|16 28.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 38459123 - 38486475

NM_009855 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13573845901238459368
3586753847394738474264
6769573847914538479426
95810713848270138482814
107217003848638538487013

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130236Full LengthBC131959CD80 antigen
40131146Full LengthBC145843CD80 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033985  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009855 NP_033985 Q00609
Q549R2
V-set
C2-set_2

Related Sequences

 
mRNAGenPeptSwissProt
AF065893 AAD25876 Q9R1Z9
AF065894 AAD25877 Q00609
Q549R2
AF065895 AAD25878 Q00609
Q549R2
AF065896 AAD25879 Q00609
Q549R2
BC131959 AAI31960 Q549R2
BC145843 AAI45844 Q3U4B5
AY278186 AAP57303 Q00609
Q549R2
D16220 BAA03748 Q00609
AK154329 BAE32518 Q3U4B5
X60958 CAA43291 Q00609
Q549R2
AJ278965 CAC34306 Q00609
Q549R2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd80 NP_033985 R.norvegicus Cd80 25408   NP_037058 69
H.sapiens CD80 941 Gene Info NP_005182 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta