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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syt6, synaptotagmin VI
Sequence ID:NM_018800
Entrez Gene ID:54524
Ensembl ID:ENSMUSG00000027849

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 F3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 103575377 - 103630927

NM_018800 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1260103379203103379462
261609103389264103389612
6101171103391155103391716
11721292103424708103424828
12931464103429419103429590
14651615103430904103431054
16161683103434824103434891
16844416103436369103439101

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6400470Full LengthBC065065synaptotagmin VI
6593654Full LengthBC050760synaptotagmin VI

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061270  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018800 NP_061270 Q9R0N8 C2

Related Sequences

 
mRNAGenPeptSwissProt
BC050760 AAH50760 Q05BE2
BC065065 AAH65065 Q6P1H9
AB026803 BAA85775 Q9R0N8
AB026809 BAA85781 Q9R0N8
AB026810 BAA85782 Q9R0N8
AK044551 BAC31977 Q8C8S6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syt6 NP_061270 R.norvegicus Syt6 60565   NP_071527 98
H.sapiens SYT6 148281 Gene Info NP_995320 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)