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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lta, lymphotoxin A
Sequence ID:NM_010735
Entrez Gene ID:16992
Ensembl ID:ENSMUSG00000024402

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.06 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35203167 - 35205213

NM_010735 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
4210253534011035341093
102611253534131935341418
112612303534150235341606
123114233534210335342295

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30846267Full LengthBC099464lymphotoxin A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034865  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010735 NP_034865 P09225
Q542S2
TNF

Related Sequences

 
mRNAGenPeptSwissProt
M16819 AAA40460 P09225
Q542S2
BC099464 AAH99464 P09225
Q542S2
AK080308 BAC37874 P09225
Q542S2
AK153694 BAE32147 P09225
Q542S2
AK156659 BAE33797 Q3U0Q5
X14800 CAA32906 P09225

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lta NP_034865 R.norvegicus Lta 25008   NP_542947 96
H.sapiens LTA 4049 Gene Info NP_000586 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)