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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccrn4l, CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Sequence ID:NM_009834
Entrez Gene ID:12457
Ensembl ID:ENSMUSG00000023087

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 B-D

Chromosomal Position (from UCSC)

Chromosomal Position:3: 51224460 - 51251624

NM_009834 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18415102836851029208
84211115105172651051995
111230695105361851055575

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862391Full LengthBC139369CCR4 carbon catabolite repression 4-like (S. cerevisiae)
8862392Full LengthBC139370CCR4 carbon catabolite repression 4-like (S. cerevisiae)
4017331IncompleteBC043927CCR4 carbon catabolite repression 4-like (S. cerevisiae)
4206769IncompleteBC026940CCR4 carbon catabolite repression 4-like (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033964  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009834 NP_033964 O35710 Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProt
U70139 AAB62717 O35710
AF183960 AAD56547 O35710
AF199491 AAG01384 O35710
BC139369 AAI39370 B2RTJ8
BC139370 AAI39371 B2RTJ8
AK087790 BAC40004 O35710
AK149340 BAE28819 Q3UEU2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccrn4l NP_033964 R.norvegicus Ccrn4l 310395   NP_612535 98
H.sapiens CCRN4L 25819 Gene Info NP_036250 92
D.melanogaster cu 41339   NP_001097746 53
A.gambiae AgaP_AGAP009893 1279310   XP_319013 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta