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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smarcc1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Sequence ID:NM_009211
Entrez Gene ID:20588
Ensembl ID:ENSMUSG00000032481

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 110129877 - 110132000

 Exon Info From UCSC:
NM_009211

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6400646Full LengthBC052423SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
4013032IncompleteBC022173SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
6406352IncompleteBC053064SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033237  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009211 NP_033237 P97496 Myb_DNA-binding
SWIRM

Related Sequences

 
mRNAGenPeptSwissProt
U85614 AAB42085 P97496
BC052423 AAH52423 P97496
BC053064 AAH53064 P97496
AK133922 BAE21927 Q3UZD0
AK143485 BAE25395 Q3UPK0
AK144122 BAE25713 Q3UNN4
AK144631 BAE25978 Q3UMX0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarcc1 NP_033237 R.norvegicus Smarcc1 301020   NP_001100331 98
H.sapiens SMARCC1 6599 Gene Info NP_003065 96
S.pombe ssr2 2541851   NP_593800 42
N.crassa NCU08003 3878837   XP_962673 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta