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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Trappc3, trafficking protein particle complex 3
Sequence ID:NM_013718
Entrez Gene ID:27096
Ensembl ID:ENSMUSG00000028847

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 126262413 - 126275389

NM_013718 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1133125939648125939780
134231125949921125950018
232331125950218125950317
332514125951133125951315
5151256125952385125953126

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3490979Full LengthBC003736trafficking protein particle complex 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038746  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013718 NP_038746 O55013
Q3U9K9
TRAPP_Bet3

Related Sequences

 
mRNAGenPeptSwissProt
AF041433 AAB96937 O55013
Q3U9K9
BC003736 AAH03736 O55013
Q3U9K9
AK151747 BAE30657 O55013
Q3U9K9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trappc3 NP_038746 R.norvegicus Trappc3 362599   NP_001008377 100
H.sapiens TRAPPC3 27095 Gene Info NP_055223 98
D.melanogaster Bet3 39090   NP_648312 62
S.cerevisiae BET3 853942   NP_012994 57
A.thaliana AT5G54750 835565   NP_001190539 56
S.pombe bet3 2543570   NP_593886 56
N.crassa NCU05796 3876219   XP_960056 55
P.falciparum PFD0895c 812505   XP_001351493 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)