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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Psme1, proteasome (prosome, macropain) 28 subunit, alpha
Sequence ID:NM_011189
Entrez Gene ID:19186
Ensembl ID:ENSMUSG00000022216

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 C2-D1|14 22.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 55578519 - 55581527

 Exon Info From UCSC:
NM_011189

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5689048Full LengthBC088981proteasome (prosome, macropain) 28 subunit, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035319  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011189 NP_035319 P97371
Q5HZK3
PA28_alpha
PA28_beta

Related Sequences

 
mRNAGenPeptSwissProt
U60328 AAC53295 P97371
BC088981 AAH88981 P97371
Q5HZK3
D87909 BAA22039 P97371
Q5HZK3
AK008514 BAB25712 P97371
AK019390 BAB31696 P97371
Q5HZK3
AK150708 BAE29786 P97371
Q5HZK3
AK150975 BAE30004 P97371
Q5HZK3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Psme1 NP_035319 R.norvegicus Psme1 29630   NP_058960 98
H.sapiens PSME1 5720 Gene Info NP_006254 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)