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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vbp1, Von Hippel-Lindau binding protein 1
Sequence ID:NM_011692
Entrez Gene ID:22327
Ensembl ID:ENSMUSG00000031197

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X A7.3|X 30.8

Chromosomal Position (from UCSC)

Chromosomal Position:X: 75514327 - 75534935

NM_011692 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11327275963572759766
1332577276242772762551
2583247276670172766767
3254237276859872768696
4245627277642372776561
56316017277924672780284

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015730Full LengthBC148716von Hippel-Lindau binding protein 1
40130446IncompleteBC132169von Hippel-Lindau binding protein 1
40130448IncompleteBC132171von Hippel-Lindau binding protein 1
100014729BC141458von Hippel-Lindau binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035822  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011692 NP_035822 P61759 Prefoldin

Related Sequences

 
mRNAGenPeptSwissProt
U96760 AAC23908 P61759
BC132169 AAI32170 A3KMJ8
BC132171 AAI32172 A3KMJ8
BC141458 AAI41459 P61759
BC148716 AAI48717  
AK002282 BAB21986 P61759
AK008847 BAB25926 P61759
AK077923 BAC37066 P61759
AK151527 BAE30475 P61759
AK153069 BAE31695 P61759
AK159284 BAE34961 P61759
AK167064 BAE39225 P61759
AK167742 BAE39780 Q3TIR6
AK169185 BAE40962 P61759

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vbp1 NP_035822 H.sapiens VBP1 7411 Gene Info NP_003363 97
D.melanogaster CG6719 41365   NP_650067 57
A.gambiae AgaP_AGAP011165 1270764   XP_309484 55
N.crassa NCU02264 3876094   XP_959908 47
S.pombe SPAC3H8.07c 2543378   NP_593000 46
S.cerevisiae PAC10 852969   NP_011592 45
A.thaliana PFD3 835011   NP_001032045 44
C.elegans pfd-3 173141   NP_493228 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)