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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rag1, recombination activating gene 1
Sequence ID:NM_009019
Entrez Gene ID:19373
Ensembl ID:ENSMUSG00000061311

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E2|2 56.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 101647926 - 101649542

NM_009019 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
36558101478410101484965
65596669101489578101489688

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861362Full LengthBC138342recombination activating gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033045  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009019 NP_033045 P15919
Q78NA6
zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
M29475 AAA40028 P15919
Q78NA6
BC138342 AAI38343 P15919
AK087946 BAC40054 Q8C2U3
AK088725 BAC40529 Q8C2F3
AK162974 BAE37143 Q3TR87

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rag1 NP_033045 R.norvegicus Rag1 84600   NP_445920 96
H.sapiens RAG1 5896 Gene Info NP_000439 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)