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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Colec10, collectin sub-family member 10
Sequence ID:NM_173422
Entrez Gene ID:239447
Ensembl ID:ENSMUSG00000038591

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D1|15 25.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 54410769 - 54462634

NM_173422 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11525424232854242479
1532245426654754266618
2252965427071454270785
2973505428890454288957
3514465429128354291378
44745875429377254297912

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40043083Full LengthBC108945collectin sub-family member 10
40044882Full LengthBC106836collectin sub-family member 10
40044883Full LengthBC106837collectin sub-family member 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775598  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173422 NP_775598 Q8CF98 Lectin_C
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC106836 AAI06837 Q8CF98
BC106837 AAI06838 Q8CF98
BC108945 AAI08946 Q8CF98
AK028423 BAC25941 Q8CF98
AB016429 BAC53954 Q8CF98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Colec10 NP_775598 R.norvegicus Colec10 299928   NP_001124013 95
H.sapiens COLEC10 10584 Gene Info NP_006429 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)