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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chd1, Chromodomain helicase DNA binding protein 1
Sequence ID:NM_007690
Entrez Gene ID:12648
Ensembl ID:ENSMUSG00000023852

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A2|17 7.2

Chromosomal Position (from UCSC)

Chromosomal Position:17: 15771778 - 15772606

 Exon Info From UCSC:
NM_007690

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40086932Full LengthBC115822chromodomain helicase DNA binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031716  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007690 NP_031716 P40201 EC 3.6.4.12 SNF2_N
Helicase_C
Chromo

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L10410 AAB08486 P40201 EC 3.6.4.12
BC115822 AAI15823 P40201 EC 3.6.4.12
AK015218 BAB29753 Q9D5K6  
AK021188 BAB32322 Q9CRD9  
AK042202 BAC31196 Q8C9F3  
AK049686 BAC33872 Q8C7Q2  
AK140386 BAE24366 Q3USG6  
AK142471 BAE25077 Q3UQG5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chd1 NP_031716 R.norvegicus Chd1 308215   NP_001100935 98
H.sapiens CHD1 1105 Gene Info NP_001261 96
C.elegans H06O01.2 172432   NP_491994 48
A.thaliana CHR5 815823   NP_178970 41
N.crassa NCU03060 3880017   XP_963868 35
P.falciparum PF10_0232 810389   XP_001347516 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)