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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Actn4, Actinin alpha 4
Sequence ID:NM_021895
Entrez Gene ID:60595
Ensembl ID:ENSMUSG00000054808

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 28893253 - 28962280

 Exon Info From UCSC:
NM_021895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3157024Full LengthBC013616actinin alpha 4
5351470Full LengthBC087554actinin alpha 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068695  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021895 NP_068695 Q3ULT2
P57780
efhand
CH
Spectrin

Related Sequences

 
mRNAGenPeptSwissProt
U41415 AAB01088 Q61063
U41416 AAB01089 Q61064
BC013616 AAH13616 Q3ULT2
P57780
BC087554 AAH87554 Q3ULT2
P57780
DQ303410 ABC66068 Q1A602
DQ303411 ABC66069 Q3ULT2
AK077839 BAC37028 Q8BP35
AK145322 BAE26366 Q3ULT2
P57780
AK150044 BAE29264 Q3UDJ7
AJ289242 CAC10069 Q3ULT2
P57780

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Actn4 NP_068695 H.sapiens ACTN4 81 Gene Info NP_004915 99
R.norvegicus Actn4 63836   NP_113863 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)