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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccr6, chemokine (C-C motif) receptor 6
Sequence ID:NM_001190333
NM_001190334
NM_001190335
NM_001190336
NM_001190337
NM_001190338
NM_009835
Entrez Gene ID:12458
Ensembl ID:ENSMUSG00000040899

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A1|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 8245079 - 8257120

 Exon Info From UCSC:
NM_001190333
NM_001190334
NM_001190335
NM_001190336
NM_001190337
NM_001190338
NM_009835

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40046794Full LengthBC100758chemokine (C-C motif) receptor 6
40046795Full LengthBC105669chemokine (C-C motif) receptor 6
40046796Full LengthBC100757chemokine (C-C motif) receptor 6
40046797Full LengthBC100756chemokine (C-C motif) receptor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033965  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190333 NP_001177262    
NM_001190334 NP_001177263    
NM_001190335 NP_001177264    
NM_001190336 NP_001177265    
NM_001190337 NP_001177266    
NM_001190338 NP_001177267    
NM_009835 NP_033965 Q542B6
O54689
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC100756 AAI00757 Q542B6
O54689
BC100757 AAI00758 Q542B6
O54689
BC100758 AAI00759 Q542B6
O54689
BC105669 AAI05670 Q542B6
AB009369 BAA23776 Q542B6
O54689
AB016031 BAA82443 Q9R1V0
AK089712 BAC40946 Q542B6
O54689
AK154413 BAE32567 Q3U467

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccr6 NP_001177267 R.norvegicus Ccr6 308163   NP_001013163 87
H.sapiens CCR6 1235 Gene Info NP_004358 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)