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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Usf1, upstream transcription factor 1
Sequence ID:NM_009480
Entrez Gene ID:22278
Ensembl ID:ENSMUSG00000026641

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H|1 93.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 171415519 - 171418121

NM_009480 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1182173341811173341992
183275173344567173344659
276325173345635173345684
326441173345845173345960
442543173346265173346366
544739173346940173347135
740827173347372173347459
828886173347603173347661
8871110173347771173347994
11111821173348162173348872

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6506829Full LengthBC049784upstream transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033506  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009480 NP_033506 Q61069
Q3UQH7
HLH

Related Sequences

 
mRNAGenPeptSwissProt
BC049784 AAH49784 Q810L6
AF479773 AAL87134 Q8R4E5
AK142437 BAE25064 Q61069
Q3UQH7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Usf1 NP_033506 R.norvegicus Usf1 83586   NP_113965 99
H.sapiens USF1 7391 Gene Info NP_009053 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)