Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ly6e, lymphocyte antigen 6 complex, locus E
Sequence ID:NM_001164036
NM_001164037
NM_001164038
NM_001164039
NM_001164040
NM_008529
Entrez Gene ID:17069
Ensembl ID:ENSMUSG00000022587

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D3|15 41.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 74955616 - 74959903

 Exon Info From UCSC:
NM_001164036
NM_001164037
NM_001164038
NM_001164039
NM_001164040
NM_008529

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651183Full LengthBC019113lymphocyte antigen 6 complex, locus E
3155116Full LengthBC005684lymphocyte antigen 6 complex, locus E
3485382Full LengthBC003926lymphocyte antigen 6 complex, locus E
3490293Full LengthBC002116lymphocyte antigen 6 complex, locus E
3969173Full LengthBC080711lymphocyte antigen 6 complex, locus E
4205673Full LengthBC053523lymphocyte antigen 6 complex, locus E
5025135Full LengthBC040691lymphocyte antigen 6 complex, locus E
5025954IncompleteBC037143lymphocyte antigen 6 complex, locus E

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032555  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164036 NP_001157508    
NM_001164037 NP_001157509    
NM_001164038 NP_001157510    
NM_001164039 NP_001157511    
NM_001164040 NP_001157512    
NM_008529 NP_032555 Q99JA5 UPAR_LY6

Related Sequences

 
mRNAGenPeptSwissProt
U04268 AAA19121 Q64253
Q99JA5
U09192 AAB03366 Q64253
Q99JA5
BC002116 AAH02116 Q99JA5
BC003926 AAH03926 Q99JA5
BC005684 AAH05684 Q99JA5
BC019113 AAH19113 Q99JA5
BC037143 AAH37143 Q8JZT1
BC040691 AAH40691 Q99JA5
BC053523 AAH53523 Q99JA5
BC080711 AAH80711 Q99JA5
AK014207 BAB29205 Q9CXN2
CT010220 CAJ18428 Q99JA5
CT010244 CAJ18452 Q99JA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ly6e NP_001157509 R.norvegicus Ly6e 362934   NP_001017467 90
H.sapiens LY6E 4061 Gene Info NP_001120685 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)