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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pabpn1, poly(A) binding protein, nuclear 1
Sequence ID:NM_019402
Entrez Gene ID:54196
Ensembl ID:ENSMUSG00000022194

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 C3|14 19.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 54894147 - 54898156

NM_019402 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13525551297955513330
3534675551368455513798
4685355551446555514532
5366425551465355514759
6437305551578855515875
7318825551595755516108
88317935551685355517763

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4218469Full LengthBC055866poly(A) binding protein, nuclear 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062275  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019402 NP_062275 Q8CCS6 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC055866 AAH55866 Q8CCS6
AK032172 BAC27741 Q8CCS6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pabpn1 NP_062275 R.norvegicus Pabpn1 116697   NP_001128480 99
H.sapiens PABPN1 8106 Gene Info NP_004634 98
A.gambiae AgaP_AGAP005117 1274794   XP_313998 65
D.melanogaster Pabp2 35788   NP_476902 62
C.elegans pabp-2 172768   NP_492504 56
A.thaliana PABN1 835186   NP_568751 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta