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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vcam1, vascular cell adhesion molecule 1
Sequence ID:NM_011693
Entrez Gene ID:22329
Ensembl ID:ENSMUSG00000027962

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 G1|3 50.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 116123441 - 116129457

NM_011693 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11018115812937115813954
10191285115817270115817536
12861552115818802115819068
15531873115820140115820460
18742149115823715115823990
21502416115827300115827566
24172737115828872115829192
27383013115831450115831725
30143398115832221115832605

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4196681Full LengthBC029823vascular cell adhesion molecule 1
4206476Full LengthBC011159vascular cell adhesion molecule 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035823  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011693 NP_035823 Q8K0X1 ig
C2-set
I-set
V-set

Related Sequences

 
mRNAGenPeptSwissProt
M84487 AAA40545 P29533
L08431 AAA40546 Q544V4
P29533
U12884 AAA64832 Q544V4
P29533
L12541 AAC37607 P29533
BC011159 AAH11159 Q91X98
BC029823 AAH29823 Q8K0X1
AK030195 BAC26834 Q544V4
AK143401 BAE25364 Q3UPN1
AK162954 BAE37132 Q3TR98
X67783 CAA47989 P29533
CT010373 CAJ18580 Q8K0X1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vcam1 NP_035823 R.norvegicus Vcam1 25361   NP_037021 86
H.sapiens VCAM1 7412 Gene Info NP_001069 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)