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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cxcl9, chemokine (C-X-C motif) ligand 9
Sequence ID:NM_008599
Entrez Gene ID:17329
Ensembl ID:ENSMUSG00000029417

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E2|5 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 92322984 - 92328079

NM_008599 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
125769275035692752931
257726619275408992754173
266227889275577592755901
278929059275698892757104

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3257716Full LengthBC003343chemokine (C-X-C motif) ligand 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032625  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008599 NP_032625 P18340 IL8

Related Sequences

 
mRNAGenPeptSwissProt
M34815 AAA39706 P18340
BC003343 AAH03343 P18340
AK042017 BAC31132 P18340
AK042480 BAC31271 Q8C9B8
AK156012 BAE33544 P18340
AK156029 BAE33552 P18340
AK156453 BAE33718 P18340
AK157109 BAE33966 Q3U089
AK157118 BAE33967 P18340
CT010194 CAJ18402 P18340

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl9 NP_032625 R.norvegicus Cxcl9 246759   NP_663705 84
H.sapiens CXCL9 4283 Gene Info NP_002407 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)